SustainPineDB

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Assembly info
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ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene19983

Length: 334 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene19983
GGGTGCTCGGTCGCCGTCTCCGGAGCCCATCTATGATAACAATGGTTAGAATCAATACAAGGGAATTCAGAGCCCGAGAAAAGCTTACCAGGGAGAGGCAGGAGGTGATTTCCCAGCTTATCAAGCGAAACCCAGCATTTAAGCCTCCGGCAGATTACCGTCCACCGAAGCTTTATAAGAAACTGTTCATTCCTGTGAAGGATTTTCCAGGGTATAATTTTATTGGCCTCATTATTGGCCCCAGAGGCAACACCCAGAAGAGAATGGAGAAGGAGACTGGTGCAAAGATTGTTATAAGAGGCAAGGGTTCTGTCAAGGAGGGTAGGTTAACATT

Ace file of the UniGene biog3_v1.0_unigene19983 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene634	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Zinc finger protein, putative n=1 Tax=Ricinus communis RepID=B9R9V5_RICCO	-	-	86%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	64%
Blast2go	splicing factor 1	-	-	95%

Source	GOs	Term	Type	Identity
Blast2go	RNA splicing	GO:0008380	Biological Process	95%
Blast2go	RNA binding	GO:0003723	Molecular Function	95%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	95%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	95%

Source	InterPros	Term	Type	Identity
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Zinc finger, RanBP2-type	IPR001876	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	K Homology domain	IPR004087	-	-
Sma3	K Homology domain, type 1	IPR004088	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3		IPR018111	-	-
Sma3	Glycoside hydrolase, family 1, active site	IPR018120	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LRH8

Fln msg: Distance to subject end: 637 aas, your sequence is shorter than subject: 110 - 970

Fln protein: VLGRRLRSPSMITMVRINTREFRAREKLTRERQEVISQLIKRNPAFKPPADYRPPKLYKKLFIPVKDFPGYNFIGLIIGPRGNTQKRMEKETGAKIVIRGKGSVKEGRLT

Protein Length: 111

Fln nts: GGGTGCTCGGTCGCCGTCTCCGGAGCCCATCTATGATAACAATGGTTAGAATCAATACAAGGGAATTCAGAGCCCGAGAAAAGCTTACCAGGGAGAGGCAGGAGGTGATTTCCCAGCTTATCAAGCGAAACCCAGCATTTAAGCCTCCGGCAGATTACCGTCCACCGAAGCTTTATAAGAAACTGTTCATTCCTGTGAAGGATTTTCCAGGGTATAATTTTATTGGCCTCATTATTGGCCCCAGAGGCAACACCCAGAAGAGAATGGAGAAGGAGACTGGTGCAAAGATTGTTATAAGAGGCAAGGGTTCTGTCAAGGAGGGTAGGTTAACATT

Fln Alignment:

biogeco3_mira_c17538___VRINTREFRAREKLTRERQEVISQLIKRNPAFKPPADYRPPKL--YKKLFIPVKDFPGYNFIGLIIGPRGNTQKRMEKETGAKIVIRGKGSVKE
B8LRH8__________________MRINTREIRARQKLMDERQMIIARLIKKTPAFRPPADYKSPSLKHHKKLYIPLKEYPGYNFVGIILGPHGNTQKRMEQETGAKILLRGRGSKRD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain