SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene19975

Length: 238 nt

UniGene Fasta

>biog3_v1.0_unigene19975
TGCAACAAACAGGAACAAAGCCAGACCATATCACCTTCATTACTGTACTGTCTGCCTGCAGCTATGCTGGCCTGGTGGAAGAAGGTTGGCAATGCTTTAATTCCATGAGTCAAGATTATCAGATTAAACCTTGTATGGAGCACTATGCTTGCATGGTTGATCTTCTAGGCCGCTCTGGGCACCTAATCAAGGCACACAATTTTATTGAAAAGATGCCAATAGAGCCCAATGCAATTGT

Ace file of the UniGene biog3_v1.0_unigene19975

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene55420	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	71%
Blast2go	pentatricopeptide repeat-containing protein	-	-	7.56653e-33	79%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Beta-lactamase, class-A/D	IPR000871	-	-
Sma3	Adenosine/AMP deaminase domain	IPR001365	-	-
Sma3	Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1	IPR001578	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Calcium-binding EF-hand	IPR002048	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	EF-hand-like domain	IPR011992	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Methyltransferase type 11	IPR013216	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Thioredoxin, conserved site	IPR017937	-	-
Sma3		IPR018169	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	EF-hand	IPR018248	-	-
Sma3	EF-HAND 2	IPR018249	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5ADG9

Fln msg: Distance to subject end: 201 aas, your sequence is shorter than subject: 78 - 312

Fln protein: QQTGTKPDHITFITVLSACSYAGLVEEGWQCFNSMSQDYQIKPCMEHYACMVDLLGRSGHLIKAHNFIEKMPIEPNAI

Protein Length: 79

Fln nts: TGCAACAAACAGGAACAAAGCCAGACCATATCACCTTCATTACTGTACTGTCTGCCTGCAGCTATGCTGGCCTGGTGGAAGAAGGTTGGCAATGCTTTAATTCCATGAGTCAAGATTATCAGATTAAACCTTGTATGGAGCACTATGCTTGCATGGTTGATCTTCTAGGCCGCTCTGGGCACCTAATCAAGGCACACAATTTTATTGAAAAGATGCCAATAGAGCCCAATGCAATTGT

Fln Alignment:

biogeco3_mira_c17521___QQTGTKPDHITFITVLSACSYAGLVEEGWQCFNSMSQDYQIKPCMEHYACMVDLLGRSGHLIKAHNFIEKMPIEPNA
D5ADG9__________________QQRGVKPNEITFISVLSACSHAGLVDEGWKCYNCMTLDYAITPTVEHYACMVDLLGRAGHLNEAWDFIEKMPIEPGA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain