SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene19907

Length: 324 nt

UniGene Fasta

>biog3_v1.0_unigene19907
AATGTCTCAAGGTCTTGAGTCAAGCCTGATTGAGAGCTTTCCCCTGTTCCGTTATTCTTTGGTGAAAGGGTTGAAGCTTGGAAAGGGGTCAATGGAATGTGTAGTTTGTTTGAGTGAATTTCAGGAGGATGAAACACTGAGGTTACTGCCTAAATGTGGCCATGCATTTCATCCTGACTGCATTGATATGTGGCTCTTTTCACACACTACATGCCCTTTATGTCGATCTAGTCTTCTTTCCCAATTCAATGATGTAACCATGGAAGCCCAGCCCCAGCCTCAGCCTCATAGGGGACTGTCACAGGCAGCCGAGCAAGTAGTAAT

Ace file of the UniGene biog3_v1.0_unigene19907

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2098	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ring finger protein, putative n=1 Tax=Ricinus communis RepID=B9RF24_RICCO	-	-	4.99997e-41	44%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	70%
Blast2go	ring finger	-	-	8.7804e-41	62%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ubiquitin--protein ligase.	EC:6.3.2.19	-	8.7804e-41	62%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to chitin	GO:0010200	Biological Process	8.7804e-41	62%
Blast2go	protein ubiquitination	GO:0016567	Biological Process	8.7804e-41	62%
Blast2go	metal ion binding	GO:0046872	Molecular Function	8.7804e-41	62%
Blast2go	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	8.7804e-41	62%
Blast2go	plasma membrane	GO:0005886	Cellular Component	8.7804e-41	62%

Source	InterPros	Term	Type	Identity
Sma3	Protamine P1	IPR000221	-	-
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Carotenoid oxygenase	IPR004294	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3		IPR015706	-	-
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LL09

Fln msg: Distance to subject end: 245 aas, your sequence is shorter than subject: 107 - 467

Fln protein: MSQGLESSLIESFPLFRYSLVKGLKLGKGSMECVVCLSEFQEDETLRLLPKCGHAFHPDCIDMWLFSHTTCPLCRSSLLSQFNDVTMEAQPQPQPHRGLSQAAEQVV

Protein Length: 108

Fln nts: AATGTCTCAAGGTCTTGAGTCAAGCCTGATTGAGAGCTTTCCCCTGTTCCGTTATTCTTTGGTGAAAGGGTTGAAGCTTGGAAAGGGGTCAATGGAATGTGTAGTTTGTTTGAGTGAATTTCAGGAGGATGAAACACTGAGGTTACTGCCTAAATGTGGCCATGCATTTCATCCTGACTGCATTGATATGTGGCTCTTTTCACACACTACATGCCCTTTATGTCGATCTAGTCTTCTTTCCCAATTCAATGATGTAACCATGGAAGCCCAGCCCCAGCCTCAGCCTCATAGGGGACTGTCACAGGCAGCCGAGCAAGTAGTAAT

Fln Alignment:

biogeco3_mira_c17425___SQGLESSLIESFPLFRYSLVKGLKLG-KGSMECVVCLSEFQEDETLRLLPKCGHAFHPDCIDMWLFSHTTCPLCRSSL
B8LL09__________________NRGLDRAVIESFPVFSYDLVKGLKAQTKETLECAVCLSEFEDDEQLRLLPKCSHAFHPDCIDTWLFSHTTCPVCRTSL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain