SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene19890

Length: 245 nt

UniGene Fasta

>biog3_v1.0_unigene19890
GGAGATCCGAGTGAAGGAATTCTCTGAATCTCCATTCTTTAGCTTTTTCGCATTTTTAGATTTGGGATTTCTTGCAAAGATGCTGCTGCGAAGCTCTTCTAGTCCCGTTCTGGGCTCCATTAATCCTAGTCCCATTCTGGACTCCATTAATACCATGTTACAACAGGCCGATGGTCTGAAGGAGCTAGAGCCGGAGTCGAGGTTCAGGCGCTGCAAATCTGCAAAACCACTGTCTAGCTCACATT

Ace file of the UniGene biog3_v1.0_unigene19890

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene32451	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	tetratricopeptide repeat domain-containing protein [Arabidopsis thaliana] gb\|AED92812.1\| tetratricopeptide repeat domain-containing protein [Arabidopsis thaliana]	-	-	7.0e-36	37%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	66%
Blast2go	tetratricopeptide repeat domain-containing protein	-	-	0.0	62%

Source	InterPros	Term	Type	Identity
Sma3	RNA-processing protein, HAT helix	IPR003107	-	-
Sma3	Tetratricopeptide TPR-3	IPR011716	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Tetratricopeptide repeat-containing domain	IPR013026	-	-
Sma3	Tetratricopeptide TPR2	IPR013105	-	-
Sma3	DNA ligase, ATP-dependent, conserved site	IPR016059	-	-
Sma3	Tetratricopeptide repeat	IPR019734	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PTH0

Fln msg: Distance to subject end: 154 aas, your sequence is shorter than subject: 55 - 200

Fln protein: MLLRSSSSPVLGSINPSPILDSINTMLQQADGLKELEPESRFRRCKSAKPLSSSH

Protein Length: 56

Fln nts: GGAGATCCGAGTGAAGGAATTCTCTGAATCTCCATTCTTTAGCTTTTTCGCATTTTTAGATTTGGGATTTCTTGCAAAG_-_ATGCTGCTGCGAAGCTCTTCTAGTCCCGTTCTGGGCTCCATTAATCCTAGTCCCATTCTGGACTCCATTAATACCATGTTACAACAGGCCGATGGTCTGAAGGAGCTAGAGCCGGAGTCGAGGTTCAGGCGCTGCAAATCTGCAAAACCACTGTCTAGCTCACATT

Fln Alignment:

biogeco3_mira_c17404___MLLRSSSSPVLGSINPSPILDSINTMLQQADGLKELEPESRFRRCKSAKPLSSS
C0PTH0__________________MLLRSSSSRLLGSINP---------MLPQSEALKELEPESSLSRCKSAKPLSSS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain