SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene19845

Length: 280 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene19845
ATCTGGTGATTCAGGCGGAGTCATGGACAGAGTAGTATCTCAGATGCTAGCTGAAATTGATGGTCTAAATGAGACTACCCAGGATTTGTTTATTATAGGCGCTAGTAATCGGCCTGATCTTATTGATCCTGCACTTTTACGGCCTGGAAGGTTTGACAAATTATTGTATGTAGGCATCAGCTCTGACTCATCTTATCGAGAACGGGTGCTGGGAGCATTGACCCGAAAGTTCAAACTCCATGGAAATGTATCATTGTCATCAATAGCAAAAAGATACATT

Ace file of the UniGene biog3_v1.0_unigene19845 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene41424	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	AAA-family ATPase n=1 Tax=Phaseolus vulgaris RepID=E9NZU9_PHAVU	-	-	3.0e-38	85%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	49%
Blast2go	peroxin 6	-	-	8.40779e-45	91%

Source	ECs	Term	Type	e value	Identity
Blast2go	Nucleoside-triphosphatase.	EC:3.6.1.15	-	8.40779e-45	91%

Source	KEGGs	Term	e value	Identity
Blast2go	Purine metabolism	00230	8.40779e-45	91%
Blast2go	Thiamine metabolism	00730	8.40779e-45	91%
Blast2go	Metabolic pathways	01100	8.40779e-45	91%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein import into peroxisome matrix	GO:0016558	Biological Process	8.40779e-45	91%
Blast2go	fatty acid beta-oxidation	GO:0006635	Biological Process	8.40779e-45	91%
Blast2go	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	8.40779e-45	91%

Source	InterPros	Term	Type	Identity
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	ATPase, AAA-type, conserved site	IPR003960	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3	L-lactate dehydrogenase, active site	IPR018177	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NVV9

Fln msg: Distance to subject end: 68 aas, your sequence is shorter than subject: 93 - 416

Fln protein: SGDSGGVMDRVVSQMLAEIDGLNETTQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGISSDSSYRERVLGALTRKFKLHGNVSLSSIAKRYI

Protein Length: 94

Fln nts: ATCTGGTGATTCAGGCGGAGTCATGGACAGAGTAGTATCTCAGATGCTAGCTGAAATTGATGGTCTAAATGAGACTACCCAGGATTTGTTTATTATAGGCGCTAGTAATCGGCCTGATCTTATTGATCCTGCACTTTTACGGCCTGGAAGGTTTGACAAATTATTGTATGTAGGCATCAGCTCTGACTCATCTTATCGAGAACGGGTGCTGGGAGCATTGACCCGAAAGTTCAAACTCCATGGAAATGTATCATTGTCATCAATAGCAAAAAGATACATT

Fln Alignment:

biogeco3_mira_c17339___SGDSGGVMDRVVSQMLAEIDGLNETTQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGISSDSSYRERVLGALTRKFKLHGNVSLSSIAKR
A9NVV9__________________SGNGAAVGERLLSTLLTEIDGL-EITKGVLVLGATNRPEAIDAALMRPGRFDLVLYVP-PPDLEGRIEVLRVHTRNMKLEINVDLPQIAKK

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain