SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene19821

Length: 254 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene19821
CAATGAGTTCAGTCTCCATCTGTGGCATTGGAATTGTCAATGCTATTGAATGTATGCATTTCCTGAGGATGATGGTCTGAAGAAGTTTAGAGAATGGCTTGATTCGCCAGATCCATCGATCCTCAAAAAGCTTCATGCTTCCTCAGGGAAAAGCTCAAGAAAAAGGTCATTGAAATCAAGTAAGAAAACTGGAAGTATAGCTGAAGAAGAGGAGGAAGGTGTCATACCAGATCAGAGTACTGATACAGACCAAG

Ace file of the UniGene biog3_v1.0_unigene19821 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene27085	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	DNA-repair protein UVH3, putative n=1 Tax=Ricinus communis RepID=B9RUC5_RICCO	-	-	63%
FL-Next	sp=DNA repair protein UVH3; Arabidopsis thaliana (Mouse-ear cress).	-	-	90%
Blast2go	dna-repair protein	-	-	72%

Source	GOs	Term	Type	Identity
Blast2go	response to UV-B	GO:0010224	Biological Process	72%
Blast2go	non-photoreactive DNA repair	GO:0010213	Biological Process	72%
Blast2go	response to heat	GO:0009408	Biological Process	72%
Blast2go	protein binding	GO:0005515	Molecular Function	72%
Blast2go	catalytic activity	GO:0003824	Molecular Function	72%

Source	InterPros	Term	Type	Identity
Sma3	Xeroderma pigmentosum group G protein	IPR001044	-	-
Sma3	DNA repair protein (XPGC)/yeast Rad	IPR006084	-	-
Sma3	XPG N-terminal	IPR006085	-	-
Sma3	XPG/RAD2 endonuclease	IPR006086	-	-
Sma3	Helix-hairpin-helix motif, class 2	IPR008918	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9ATY5

Fln msg: Separated hits, possible frame ERROR between 50 and 56, Distance to subject end: 377 aas, your sequence is shorter than subject: 84 - 1479

Fln protein: MSSVSICGIGIVNAIxxxAFPEDDGLKKFREWLDSPDPSILKKLHASSGKSSRKRSLKSSKKTGSIAEEEEEGVIPDQSTDTDQ

Protein Length: 85

Fln nts: CAATGAGTTCAGTCTCCATCTGTGGCATTGGAATTGTCAATGCTATTGAxxxxxxTGCATTTCCTGAGGATGATGGTCTGAAGAAGTTTAGAGAATGGCTTGATTCGCCAGATCCATCGATCCTCAAAAAGCTTCATGCTTCCTCAGGGAAAAGCTCAAGAAAAAGGTCATTGAAATCAAGTAAGAAAACTGGAAGTATAGCTGAAGAAGAGGAGGAAGGTGTCATACCAGATCAGAGTACTGATACAGACCAAG

Fln Alignment:

biogeco3_mira_c17308___ICGIGIVNAIExxAFPEDDGLKKFREWLDSPDPSILKKLHA
Q9ATY5__________________ISGIGIVNAIExxAFPEEDGLQKFREWVESPDPTILGKTDA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain