SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene19814

Length: 337 nt

UniGene Fasta

>biog3_v1.0_unigene19814
AATGTATCAGGCCTGATGACGAGAAGCCCATCGGGCAACGGGTGGTGGAAGAGGAAATACCCATCATAGATCTCTCGGGCCTCTATGACGAACGCCGGAGGAAGACCATGGAAGAAATATCAAATGCATGCAAAGAGTGGGGATTCTTCCAAGTGATTAACCATGGGATTTCTCCGGAGCAGCTTGAGACCGCAAGTGAGGTGTCGAGCGAGTTCTTTCGTCTGCCATTGGAGGAGAAACAAAAGCACGCCAATGATCCTGTGACTTATGTTGGATATGGCAGTCGAATTGGTGTGAACAAAGGGGCGACTCTCGACTGGGGCGATTACTATTATCA

Ace file of the UniGene biog3_v1.0_unigene19814

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene492	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	leucoanthocyanidin dioxygenase-like protein [Arabidopsis thaliana] gb\|AAF01507.1\|AC009991_3 putative leucoanthocyanidin dioxygenase [Arabidopsis thaliana] gb\|AAG50980.1\|AC073395_22 leucoanthocyanidin dioxygenase, putative; 41415-43854 [Arabidopsis thalian	-	-	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	45%
Blast2go	leucoanthocyanidin dioxygenase-like protein	-	-	67%

Source	GOs	Term	Type	e value	Identity
Blast2go	oxidoreductase activity	GO:0016491	Molecular Function	0.0	67%
Blast2go	response to karrikin	GO:0080167	Biological Process	0.0	67%

Source	InterPros	Term	Type	Identity
Sma3	ArgE/DapE/ACY1/CPG2/YscS, conserved site	IPR001261	-	-
Sma3	Isopenicillin N synthase	IPR002283	-	-
Sma3	Oxoglutarate/iron-dependent oxygenase	IPR005123	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NW44

Fln msg: Distance to subject end: 216 aas, your sequence is shorter than subject: 111 - 373

Fln protein: CIRPDDEKPIGQRVVEEEIPIIDLSGLYDERRRKTMEEISNACKEWGFFQVINHGISPEQLETASEVSSEFFRLPLEEKQKHANDPVTYVGYGSRIGVNKGATLDWGDYYY

Protein Length: 112

Fln nts: AATGTATCAGGCCTGATGACGAGAAGCCCATCGGGCAACGGGTGGTGGAAGAGGAAATACCCATCATAGATCTCTCGGGCCTCTATGACGAACGCCGGAGGAAGACCATGGAAGAAATATCAAATGCATGCAAAGAGTGGGGATTCTTCCAAGTGATTAACCATGGGATTTCTCCGGAGCAGCTTGAGACCGCAAGTGAGGTGTCGAGCGAGTTCTTTCGTCTGCCATTGGAGGAGAAACAAAAGCACGCCAATGATCCTGTGACTTATGTTGGATATGGCAGTCGAATTGGTGTGAACAAAGGGGCGACTCTCGACTGGGGCGATTACTATTATCA

Fln Alignment:

biogeco3_mira_c17297___IRPDDEKPIGQRVVEEE--IPIIDLSGLY----DERRRKTMEEISNACKEWGFFQVINHGISPEQLETASEVSSEFFRLPLEEKQKHANDPVTYVGYGSRIGVNKGATLDWGD
A9NW44__________________IRIPEERPTSSLLVSRDSAIPLIDMKKLIPHREDYQRQQEMERLSNACQEWGFFQIVNHGIPHSLLDAIKGVAKEFFNLPLQEKQKCAPQAGDVQGYGKTFVVAEDQTLDWGD

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
226	33	66			0.997454

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain