SustainPineDB

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Assembly info
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene19777

Length: 310 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene19777
ATCTACAAAGAATACCATCCCCTCAAACATTCCAGAAAGATCTGGTCATCGACGAAGACATTCTTTTGGAGAAGAGGAGTTAGCATACCTACCAAATAGGAGACGCGACTTCATGATTGAGGAGGATGATAGTCATGATTCAGAATTTTCTACAGAAGGAAAGGGCGAGAACAACATAGAGGATTCATTCAAGGAGGAGAAGAAGAACAAAAAACATGGCATGCTCAATTGGTTCAAACTACGGAAGCGAGAGAATGGTGGAACAACTACAAATATTGATAATGAAAGCTCTCCAACTTCATCATACATT

Ace file of the UniGene biog3_v1.0_unigene19777 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene21226	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Kinesin heavy chain, putative n=1 Tax=Ricinus communis RepID=B9SWK1_RICCO	-	-	81%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	54%
Blast2go	kinesin heavy	-	-	89%

Source	InterPros	Term	Type	Identity
Sma3	Calponin homology domain	IPR001715	-	-
Sma3	Kinesin, motor domain	IPR001752	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Aminotransferase, class-II, pyridoxal-phosphate binding site	IPR001917	-	-
Sma3	Basic-leucine zipper domain	IPR004827	-	-
Sma3	Sodium/calcium exchanger membrane region	IPR004837	-	-
Sma3	Kinesin-related conserved domain	IPR010544	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: F6H0K4

Fln msg: Distance to subject end: 541 aas, your sequence is shorter than subject: 103 - 1132

Fln protein: STKNTIPSNIPERSGHRRRHSFGEEELAYLPNRRRDFMIEEDDSHDSEFSTEGKGENNIEDSFKEEKKNKKHGMLNWFKLRKRENGGTTTNIDNESSPTSSYI

Protein Length: 104

Fln nts: ATCTACAAAGAATACCATCCCCTCAAACATTCCAGAAAGATCTGGTCATCGACGAAGACATTCTTTTGGAGAAGAGGAGTTAGCATACCTACCAAATAGGAGACGCGACTTCATGATTGAGGAGGATGATAGTCATGATTCAGAATTTTCTACAGAAGGAAAGGGCGAGAACAACATAGAGGATTCATTCAAGGAGGAGAAGAAGAACAAAAAACATGGCATGCTCAATTGGTTCAAACTACGGAAGCGAGAGAATGGTGGAACAACTACAAATATTGATAATGAAAGCTCTCCAACTTCATCATACATT

Fln Alignment:

biogeco3_mira_c17238___STKNTIPSNIPERSGHRRRHSFGEEELAYLPNRRRDFMIEED-DSHDSEFSTEGKGE-NNIEDSFKEEKKNKKHGMLNWFKLRKREN-GGTTTNIDNESSPTSS
F6H0K4__________________STKNSMPSSLPDTAGHRRRHSFGEDELAYLPNRKREYMIGDDTGSFDSEL-LEGRSDITYLDDLVKDYKRNRRRGMLGWFKLKKPENLGGFSPNADTESSTSAS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain