SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene19771

Length: 184 nt

UniGene Fasta

>biog3_v1.0_unigene19771
AATGTCAGGATGTCTCACAGCGCTGAGTTGCATGGAGCATCGTGGAGGATGTGGTGCAGACAATGATTCAGGGGATGGTGCTGGGATTATGACTCGGATTCCATGGTCTCTACTAAATGAATGGTTTAACAGCAAGGACTACCAGCATTGGATGAGGCCAATACGGGAGTGGGAATGGTATTTC

Ace file of the UniGene biog3_v1.0_unigene19771

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene37735	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ferredoxin-dependent glutamate synthase, chloroplastic n=9 Tax=Poaceae RepID=GLTB_ORYSJ	-	-	8.0e-35	65%
FL-Next	sp=Ferredoxin-dependent glutamate synthase, chloroplastic; Oryza sativa subsp. japonica (Rice).	-	-	0.0	70%
Blast2go	ferredoxin-dependent glutamate synthase 1	-	-	3.53534e-41	76%

Source	ECs	Term	Type	e value	Identity
Blast2go	Glutamate synthase (ferredoxin).	EC:1.4.7.1	-	3.53534e-41	76%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Nitrogen metabolism	00910		3.53534e-41	76%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to light stimulus	GO:0009416	Biological Process	3.53534e-41	76%
Blast2go	photorespiration	GO:0009853	Biological Process	3.53534e-41	76%
Blast2go	positive regulation of glycine hydroxymethyltransferase activity	GO:0080114	Biological Process	3.53534e-41	76%
Blast2go	glutamate synthase (ferredoxin) activity	GO:0016041	Molecular Function	3.53534e-41	76%
Blast2go	protein binding	GO:0005515	Molecular Function	3.53534e-41	76%
Blast2go	mitochondrion	GO:0005739	Cellular Component	3.53534e-41	76%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	3.53534e-41	76%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	3.53534e-41	76%
Blast2go	membrane	GO:0016020	Cellular Component	3.53534e-41	76%
Blast2go	apoplast	GO:0048046	Cellular Component	3.53534e-41	76%

Source	InterPros	Term	Type	Identity
Sma3	Glutamine amidotransferase, class-II	IPR000583	-	-
Sma3	Glutamate synthase, alpha subunit, C-terminal	IPR002489	-	-
Sma3	Glutamate synthase, central-C	IPR002932	-	-
Sma3	Glutamate synthase, central-N	IPR006982	-	-
Sma3	Aldolase-type TIM barrel	IPR013785	-	-
Sma3	Glutamine amidotransferase, type II	IPR017932	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q69RJ0

Fln msg: Overlapping hits, possible frame ERROR between 136 and 130, Distance to subject end: 1441 aas, your sequence is shorter than subject: 61 - 1615

Fln protein: MSGCLTALSCMEHRGGCGADNDSGDGAGIMTRIPWSLLNEWFxxxxLPALDEANTGVGMVF

Protein Length: 62

Fln nts: AATGTCAGGATGTCTCACAGCGCTGAGTTGCATGGAGCATCGTGGAGGATGTGGTGCAGACAATGATTCAGGGGATGGTGCTGGGATTATGACTCGGATTCCATGGTCTCTACTAAATGAATGGTTTxxxxxxxxxxxxCTACCAGCATTGGATGAGGCCAATACGGGAGTGGGAATGGTATTTC

Fln Alignment:

biogeco3_mira_c17231___LTALSCMEHRGGCGADNDSGDGAGIMTRIPWSLLNEWFNxxGLPALDEANTGVGMVF
Q69RJ0__________________LVALGCMEHRGGCGADNDSGDGSGLMSGIPWDLFNDWANxxGLAPLDRTNTGVGMVF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain