SustainPineDB

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Assembly info
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene19763

Length: 221 nt

UniGene Fasta

>biog3_v1.0_unigene19763
AATGTATTGAAGGTACTCTTCACAGAATATCTGCAGTACGGAGCAGGAAGGGGGTTATTGTTGGCTTGACTTGTAGGGTTGGCCGTGCAGTGACTGGTCATGTTGACATGGTCCGTGATCTTTTACCTTATGGAGAAAGCATCTTATTTCTAGGCAGGCCTGGTGTTGGAAAGACCACTGTCATGCGTGAAATAGCTCGAGTTCTAGCAGATGAATTGCAT

Ace file of the UniGene biog3_v1.0_unigene19763

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene67093	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative stage III sporulation protein AA [Arabidopsis thaliana] dbj\|BAF00902.1\| hypothetical protein [Arabidopsis thaliana] gb\|AEE31582.1\| putative stage III sporulation protein AA [Arabidopsis thaliana]	-	-	1.0e-26	82%
FL-Next	sp=Uncharacterized protein ycf45; Porphyra purpurea. Plastid; Chloroplast.	-	-	0.0	69%
Blast2go	uncharacterized protein ycf45-like	-	-	4.74391e-37	95%

Source	InterPros	Term	Type	Identity
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Peptidase M14, carboxypeptidase A	IPR000834	-	-
Sma3	Single-stranded nucleic acid binding R3H	IPR001374	-	-
Sma3		IPR001984	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3		IPR015465	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: P51281

Fln msg: Distance to subject end: 413 aas, your sequence is shorter than subject: 73 - 565

Fln protein: CIEGTLHRISAVRSRKGVIVGLTCRVGRAVTGHVDMVRDLLPYGESILFLGRPGVGKTTVMREIARVLADELH

Protein Length: 74

Fln nts: AATGTATTGAAGGTACTCTTCACAGAATATCTGCAGTACGGAGCAGGAAGGGGGTTATTGTTGGCTTGACTTGTAGGGTTGGCCGTGCAGTGACTGGTCATGTTGACATGGTCCGTGATCTTTTACCTTATGGAGAAAGCATCTTATTTCTAGGCAGGCCTGGTGTTGGAAAGACCACTGTCATGCGTGAAATAGCTCGAGTTCTAGCAGATGAATTGCAT

Fln Alignment:

biogeco3_mira_c17216___IEGTLHRISAVRSRKGVIVGLTCRVGRAVTGHVDMVRDLLPYGESILFLGRPGVGKTTVMREIARVLADEL
P51281__________________IEKTLHRISSMRNREGSIIGLTCRVGRAVFGTISIIRDLLEQGDSILLLGKPGVGKTTAVREIARVLSDEM

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain