SustainPineDB

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Assembly info
Unigenes
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SSRs
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GOs
ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene19720

Length: 294 nt

UniGene Fasta

>biog3_v1.0_unigene19720
AATGTGCTTGAGTGGTTGCCAGCACAAGGTGTACACGGGTTGTTTCTCTTGTGCTTTTACCCTTATTCCTGATCCAAAGATTGGCGATCCTCCAGTGGTTCGCACATTTTGGGAGGAAACAAAGGTAGAGTTTGGGAATATAGATGACATCGCAATCAATGCATACATCAATTCAGGGGAGCCCATGGATAAGGCTGGTGCATATGGTATACAGGGCATTGGAGGAACATTTGAAAGTCAATTTCTGGTTGCTTTTTCAATGTAATGGGATTTCCAATTCATCGGTTTGACATT

Ace file of the UniGene biog3_v1.0_unigene19720

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1590	1/2

Source	Descriptions	Term	Type	Identity
AutoFact	Maf protein-like protein n=2 Tax=Selaginella moellendorffii RepID=D8QY79_SELML	-	-	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	85%
Blast2go	acetylserotonin o-methyltransferase-like	-	-	70%

Source	GOs	Term	Type	Identity
Blast2go	melatonin biosynthetic process	GO:0030187	Biological Process	70%
Blast2go	O-methyltransferase activity	GO:0008171	Molecular Function	70%
Blast2go	cytoplasm	GO:0005737	Cellular Component	70%

Source	InterPros	Term	Type	e value	Identity
Sma3	Maf-like protein	IPR003697	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NV93

Fln msg: Separated hits, possible frame ERROR between 232 and 235, STOP codon was not found. Distance to subject end: 13 aas, your sequence is shorter than subject: 98 - 222

Fln protein: MCLSGCQHKVYTGCFSCAFTLIPDPKIGDPPVVRTFWEETKVEFGNIDDIAINAYINSGEPMDKAGAYGIQGIGGTxxKSISGCFFNVMGFPIHRFDI

Protein Length: 99

Fln nts: AATGTGCTTGAGTGGTTGCCAGCACAAGGTGTACACGGGTTGTTTCTCTTGTGCTTTTACCCTTATTCCTGATCCAAAGATTGGCGATCCTCCAGTGGTTCGCACATTTTGGGAGGAAACAAAGGTAGAGTTTGGGAATATAGATGACATCGCAATCAATGCATACATCAATTCAGGGGAGCCCATGGATAAGGCTGGTGCATATGGTATACAGGGCATTGGAGGAACATTxxxAAAGTCAATTTCTGGTTGCTTTTTCAATGTAATGGGATTTCCAATTCATCGGTTTGA___CATT

Fln Alignment:

biogeco3_mira_c17157___LSGCQHKVYTGCFSCAFTLIPDPKIGDPPVVRTFWEETKVEFGXXXXXXXXXXXXSGEPMDKAGAYGIQGIGGTFxKSISGCFFNVMGFPIHRF
A9NV93__________________LSGCQHKVYTGVSLVLLPSIPDPKIGDPPVVRTFWEETKVEFARIDDIAINAYINSGEPMDKAGGYGIQGIGGTFxKSISGCFFNVMGFPIHRF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain