SustainPineDB

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Assembly info
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene19692

Length: 258 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene19692
CGGGAGTATTGATTGATAACCATTCAAATTAGTAAGAGATTGGGGATAGTTGCGCTCCGAGGAAAGCATTGAATTGGGGATCATGGCGGAAACTAATGTTACGTATTCATGGCTGGTGGGCTTCGTCTGTTTCGTTCTGGCGATAATTCTGCTTCAGCTCTACAGAATAGTGGACAGTCGAGGCTACAATTTGCCTCCCGGTTCCAGAGGGTGGCCATTGATTGGAGAATCCTTGGGCTTCATGCGAGCGATTACATT

Ace file of the UniGene biog3_v1.0_unigene19692 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7091	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	RecName: Full=Cytochrome P450 720B2; AltName: Full=Cytochrome P450 CYPB gb\|AAX07432.1\| cytochrome P450 CYPB [Pinus taeda]	-	-	74%
FL-Next	tr=CYP720B12; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	68%
Blast2go	c72b2_pinta ame: full=cytochrome p450 720b2 ame: full=cytochrome p450 cypb	-	-	77%

Source	GOs	Term	Type	Identity
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	77%
Blast2go	heme binding	GO:0020037	Molecular Function	77%
Blast2go	monooxygenase activity	GO:0004497	Molecular Function	77%
Blast2go	electron carrier activity	GO:0009055	Molecular Function	77%
Blast2go	integral to membrane	GO:0016021	Cellular Component	77%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: E5FA64

Fln msg: Distance to subject end: 425 aas, your sequence is shorter than subject: 58 - 486

Fln protein: MAETNVTYSWLVGFVCFVLAIILLQLYRIVDSRGYNLPPGSRGWPLIGESLGFMRAIT

Protein Length: 59

Fln nts: CGGGAGTATTGATTGATAACCATTCAAATTAGTAAGAGATTGGGGATAGTTGCGCTCCGAGGAAAGCATTGAATTGGGGATC_-_ATGGCGGAAACTAATGTTACGTATTCATGGCTGGTGGGCTTCGTCTGTTTCGTTCTGGCGATAATTCTGCTTCAGCTCTACAGAATAGTGGACAGTCGAGGCTACAATTTGCCTCCCGGTTCCAGAGGGTGGCCATTGATTGGAGAATCCTTGGGCTTCATGCGAGCGATTACATT

Fln Alignment:

biogeco3_mira_c17114___MAETNVTYSWLVGFVCFVLAIILLQLYRIV---DSRGYNLPPGSRGWPLIGESLGFMRAI
E5FA64__________________MAET-LPYSWLVGLVCFVLGFLLLQLYKLVWRADSRGYRLPPGSTGWPLIGETISFFRGI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain