SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene19648

Length: 201 nt

UniGene Fasta

>biog3_v1.0_unigene19648
AATGTGTGGTGTGCAAGATGTGTATGGGGAAGATCGTGCTATTGAAGATCAATTAATCACTCCATGGAGTGTCTCTGTTGCCAGTGGATGCACCTTATTACGAGATCCTCGCTTTAACAAAGGATTAGCATTCACCGAGAAGGAGAAAGACACTCACTACCTGCGAGGTCTTTTACCGCCTACTTATCTTTCACAAGAACT

Ace file of the UniGene biog3_v1.0_unigene19648

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9467	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Malic enzyme n=1 Tax=Ricinus communis RepID=B9RKI6_RICCO	-	-	79%
FL-Next	sp=Malic enzyme; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	71%
Blast2go	nadp-dependent malic enzyme	-	-	89%

Source	ECs	Term	Type	e value	Identity
Blast2go		EC:1.1.1.4-	-	0.0	89%

Source	GOs	Term	Type	Identity
Blast2go	malate metabolic process	GO:0006108	Biological Process	89%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	89%
Blast2go	NAD binding	GO:0051287	Molecular Function	89%
Blast2go	metal ion binding	GO:0046872	Molecular Function	89%
Blast2go	malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+) activity	GO:0004473	Molecular Function	89%
Blast2go	cytoplasm	GO:0005737	Cellular Component	89%

Source	InterPros	Term	Type	Identity
Sma3	Malic enzyme, conserved site	IPR015884	-	-
Sma3	Malic enzyme, N-terminal	IPR012301	-	-
Sma3	Malic enzyme, NAD-binding	IPR012302	-	-
Sma3	Malic oxidoreductase	IPR001891	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LRQ8

Fln msg: Distance to subject end: 501 aas, atg_distance in limit (1-15): atg_distance = 14, your sequence is shorter than subject: 66 - 581

Fln protein: MCGVQDVYGEDRAIEDQLITPWSVSVASGCTLLRDPRFNKGLAFTEKEKDTHYLRGLLPPTYLSQE

Protein Length: 67

Fln nts: A_-_ATGTGTGGTGTGCAAGATGTGTATGGGGAAGATCGTGCTATTGAAGATCAATTAATCACTCCATGGAGTGTCTCTGTTGCCAGTGGATGCACCTTATTACGAGATCCTCGCTTTAACAAAGGATTAGCATTCACCGAGAAGGAGAAAGACACTCACTACCTGCGAGGTCTTTTACCGCCTACTTATCTTTCACAAGAACT

Fln Alignment:

biogeco3_mira_c17058___GVQDVYGEDRAIEDQLITPWSVSVASGCTLLRDPRFNKGLAFTEKEKDTHYLRGLLPPTYLSQE
B8LRQ8__________________GVHDVYGEDRASEEQIVTPWSRTVASGNVLLRDPRYNKGLAFTDDERDYHYVRGLLPPAHMSQE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain