SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene19613

Length: 232 nt

UniGene Fasta

>biog3_v1.0_unigene19613
AATGTTCTGGAATTGACCCTAGCGGCGGAGGAGATAGTGGTGGATGTGGCTGCGGTGGCGGCGGAGGAGGAATTTTAAGGAGATTCAGAAGCTTCGGATTGAGTTGCCTGGGGGCGAACTCGGGATCGAAGACGGGGTTTTGCTCAAGTGGAAGGCCGAATTCGGGAGCACTTTAGAAAGCTGCGTTATTCTCGGCGCTTCTGCTATTATAAAAAATGGCAAGGAAACCTCT

Ace file of the UniGene biog3_v1.0_unigene19613

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene34899	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	F-box protein [Arabidopsis thaliana] sp\|Q9FNK5.1\|FB285_ARATH RecName: Full=F-box protein At5g46170 dbj\|BAB08262.1\| unnamed protein product [Arabidopsis thaliana] gb\|AAL49842.1\| unknown protein [Arabidopsis thaliana] gb\|AAN13195.1\| unknown protein [Arabido	-	-	3.0e-14	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	79%
Blast2go	f-box family protein	-	-	3.36363e-21	91%

Source	GOs	Term	Type	e value	Identity
Blast2go	heat acclimation	GO:0010286	Biological Process	3.36363e-21	91%

Source	InterPros	Term	Type	Identity
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5A9D5

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 181 aas, your sequence is shorter than subject: 77 - 348

Fln protein: MFWN*P*RRRR*WWMWLRWRRRRNFKEIQKLRIELPGGELGIEDGVLLKWKAEFGSTLESCVILGASAIIKNGKETS

Protein Length: 78

Fln nts: AATGTTCTGGAATTGACCCTAGCGGCGGAGGAGATAGTGGTGGATGTGGCTGCGGTGGCGGCGGAGGAGGAATTTTAAGGAGATTCAGAAGCTTCGGATTGAGTTGCCTGGGGGCGAACTCGGGATCGAAGACGGGGTTTTGCTCAAGTGGAAGGCCGAATTCGGGAGCACTTTAGAAAGCTGCGTTATTCTCGGCGCTTCTGCTATTATAAAAAATGGCAAGGAAACCTCT

Fln Alignment:

biogeco3_mira_c17002___NFKEIQKLRIELPGGELGIEDGVLLKWKAEFGSTLESCVILGASAIIKNGKET
D5A9D5__________________NFKEIQHLRIELPGGELGVEDGVLLKWKAEFGSTLESCVIFGAASVLSKGLKT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain