SustainPineDB

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Assembly info
Unigenes
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SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene19495

Length: 238 nt

UniGene Fasta

>biog3_v1.0_unigene19495
CTTATCCCTTAGGAGTTTTGAAGAATACCTAGTAAGCAACTTCAATCGCTTCAAAGAGAAAAGAGTGAGCGTCTCTACAAAGTCATCGAATTTGTCAACTGTATCCATGGATTATGCTCTGTCCTTGGCTTGGATTTTGTACGTACGGTAACAGATGTGCATCCAAGCTTGGATGAGTCTGAACATCCAAGAGCATTAGTAATGACACTGTTGATAGGTTGGCTGCGACAATTCAAAC

Ace file of the UniGene biog3_v1.0_unigene19495

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene955	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Putative microtubule-associated protein, identical [Solanum demissum]	-	-	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	58%
Blast2go	65-kda microtubule-associated protein 3-like	-	-	76%

Source	GOs	Term	Type	e value	Identity
Blast2go	DNA binding	GO:0003677	Molecular Function	0.0	76%

Source	InterPros	Term	Type	Identity
Sma3	Domain of unknown function DUF296	IPR005175	-	-
Sma3	Microtubule-associated protein, MAP65/ASE1-type	IPR007145	-	-
Sma3	AT hook, DNA-binding motif	IPR017956	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AC28

Fln msg: Separated hits, possible frame ERROR between 180 and 186, Unexpected stop codon in the beginning of your sequence, Distance to subject end: 357 aas, your sequence is shorter than subject: 79 - 596

Fln protein: LIP*EF*RIPSKQLQSLQREKSERLYKVIEFVNCIHGLCSVLGLDFVRTVTDVHPSLDExxxSKSISNDTVDRLAATIQ

Protein Length: 80

Fln nts: CTTATCCCTTAGGAGTTTTGAAGAATACCTAGTAAGCAACTTCAATCGCTTCAAAGAGAAAAGAGTGAGCGTCTCTACAAAGTCATCGAATTTGTCAACTGTATCCATGGATTATGCTCTGTCCTTGGCTTGGATTTTGTACGTACGGTAACAGATGTGCATCCAAGCTTGGATGAGTCxxxxxxATCCAAGAGCATTAGTAATGACACTGTTGATAGGTTGGCTGCGACAATTCAAAC

Fln Alignment:

biogeco3_mira_c16851___QLQSLQREKSERLYKVIEFVNCIHGLCSVLGLDFVRTVTDVHPSLDESxxSKSISNDTVDRLAATIQ
D5AC28__________________QLQELHREKNDRLQKVFDYVNTVHALSAVMGLDFSKIVSEVHPSLDDSxxSKSISNDTLAKLAETVE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain