SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene19450

Length: 195 nt

UniGene Fasta

>biog3_v1.0_unigene19450
AAGGGATTTATTCCCAACTTTGGCCGACTCGGGTCATGGAATGTAATAATGTTCCTGACGTTGGAGCAGGTCAAAAAACTATTCGCGAGAGAAGTACCAAGTTAATTTCTTGTTGAAATGTGGAGTTGTGAAATGTTGATCAATGACTTTTAGATCATTTGATTGATATTATTCTCTTTATAGGCGTACCGTGTC

Ace file of the UniGene biog3_v1.0_unigene19450

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7912	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	uncoupling protein a [Dracunculus vulgaris]	-	-	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	100%
Blast2go	mitochondrial uncoupling protein	-	-	91%

Source	GOs	Term	Type	Identity
Blast2go	photorespiration	GO:0009853	Biological Process	91%
Blast2go	mitochondrial transport	GO:0006839	Biological Process	91%
Blast2go	proton transport	GO:0015992	Biological Process	91%
Blast2go	oxidative phosphorylation uncoupler activity	GO:0017077	Molecular Function	91%
Blast2go	binding	GO:0005488	Molecular Function	91%
Blast2go	mitochondrial inner membrane	GO:0005743	Cellular Component	91%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	91%
Blast2go	integral to membrane	GO:0016021	Cellular Component	91%
Blast2go	chloroplast	GO:0009507	Cellular Component	91%

Source	InterPros	Term	Type	Identity
Sma3	Mitochondrial brown fat uncoupling protein	IPR002030	-	-
Sma3		IPR001993	-	-
Sma3	Mitochondrial substrate/solute carrier	IPR018108	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P0D2

Fln msg: your sequence is shorter than subject: 35 - 304

Fln protein: KGFIPNFGRLGSWNVIMFLTLEQVKKLFAREVPS*

Protein Length: 36

Fln nts: AAGGGATTTATTCCCAACTTTGGCCGACTCGGGTCATGGAATGTAATAATGTTCCTGACGTTGGAGCAGGTCAAAAAACTATTCGCGAGAGAAGTACCAAGTTAA___TTTCTTGTTGAAATGTGGAGTTGTGAAATGTTGATCAATGACTTTTAGATCATTTGATTGATATTATTCTCTTTATAGGCGTACCGTGTC

Fln Alignment:

biogeco3_mira_c16790___KGFIPNFGRLGSWNVIMFLTLEQVKKLFAREVPS
A9P0D2__________________KGFIPNFGRLGSWNVIMFLTLEQVKKLFAREVPS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain