SustainPineDB

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Assembly info
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene19445

Length: 313 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene19445
TTATGATTTATGAGCTTAAGATGAAGNGTATGCTTTGCTCTTGGCTCCAGTGGCTGCTCCATTACGAAGTAAACTCTGAATTAGCTTGCGGGCATTTTGACTAAGAAGTTGGATCCACGGCTCTTCATTTCACAGAAAGTATTCGAGCTTTTGGTTGCCGTCATTAGCGGGGAAGTTGAATGGGGTTGCAACCAAAATTGCAGCGATGGCTGTGTTTAGTTATGTATATCTTATTACATAGCTGTGCAAATTAGCGGAGGTCCGCGGGAGGATTTAATTGATAGACTGCCTGGTCAGCCAAAAGTAAAACATT

Ace file of the UniGene biog3_v1.0_unigene19445 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene29005	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	88%
Blast2go	serine carboxypeptidase-like enzyme	-	-	8.25136e-25	76%

Source	InterPros	Term	Type	e value	Identity
Sma3	Peptidase S10, serine carboxypeptidase	IPR001563	-	0.0	-
Sma3	Peptidase S10, serine carboxypeptidase, active site	IPR018202	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NX75

Fln msg: Overlapping hits, possible frame ERROR between 233 and 211, Distance to subject end: 424 aas, your sequence is shorter than subject: 45 - 469

Fln protein: MGLQPKLQRWxxxxxxxxxYIAVQISGGPREDLIDRLPGQPKVKH

Protein Length: 46

Fln nts: TTATGATTTATGAGCTTAAGATGAAGtGTATGCTTTGCTCTTGGCTCCAGTGGCTGCTCCATTACGAAGTAAACTCTGAATTAGCTTGCGGGCATTTTGACTAAGAAGTTGGATCCACGGCTCTTCATTTCACAGAAAGTATTCGAGCTTTTGGTTGCCGTCATTAGCGGGGAAGTTGA_-_ATGGGGTTGCAACCAAAATTGCAGCGATGGxxxxxxxxxxxxxxxxxxxxxxxxxxxTACATAGCTGTGCAAATTAGCGGAGGTCCGCGGGAGGATTTAATTGATAGACTGCCTGGTCAGCCAAAAGTAAAACATT

Fln Alignment:

biogeco3_mira_c16785___MGLQPKLQRWLxxxxxxxYYIAVQISGGPREDLIDRLPGQPKV
A9NX75__________________MDVQPKLQRWLxxxxxxxFGIAVQISGGPAEDLIDRLPGQPKV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain