SustainPineDB

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Assembly info
Unigenes
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SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene19435

Length: 296 nt

UniGene Fasta

>biog3_v1.0_unigene19435
AATGTATATGACGTTTGTTCTTCTTCTGTTTCTTGTTTCGTTTCAATCCACAGCCACATCCTCATGGAAAGACAGTAATGAGGGTGATTGGAGAAATGAGCAGGACAGGGACAGAATCACTCAACTTCCTGGTCAGCCCTCAAATGTGAACTTTGACCAATATTCTGGCTATATAACCGTAGACAGCAACGCCGGTAGAGCTCTCTTCTACTGGCTCGTTGAAGCCACAGAAAACCCATCTTCCAAGCCTCTGGTTCTATGGTTGAATGGAGGTCCTGGATGCTCCTCTGTGGCGT

Ace file of the UniGene biog3_v1.0_unigene19435

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene17668	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	serine carboxypeptidase-like 26 [Arabidopsis thaliana] sp\|Q9ZQQ0.1\|SCP26_ARATH RecName: Full=Serine carboxypeptidase-like 26; Flags: Precursor gb\|AAD21479.1\| putative serine carboxypeptidase II [Arabidopsis thaliana] gb\|AAM15111.1\| putative serine carboxy	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	83%
Blast2go	serine carboxypeptidase-like protein	-	-	81%

Source	GOs	Term	Type	e value	Identity
Blast2go	vacuole	GO:0005773	Cellular Component	0.0	81%

Source	InterPros	Term	Type	e value	Identity
Sma3	Peptidase S10, serine carboxypeptidase	IPR001563	-	0.0	-
Sma3	Peptidase S10, serine carboxypeptidase, active site	IPR018202	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NUH4

Fln msg: Distance to subject end: 343 aas, atg_distance in limit (1-15): atg_distance = 10, your sequence is shorter than subject: 98 - 450

Fln protein: MYMTFVLLLFLVSFQSTATSSWKDSNEGDWRNEQDRDRITQLPGQPSNVNFDQYSGYITVDSNAGRALFYWLVEATENPSSKPLVLWLNGGPGCSSVA

Protein Length: 99

Fln nts: A_-_ATGTATATGACGTTTGTTCTTCTTCTGTTTCTTGTTTCGTTTCAATCCACAGCCACATCCTCATGGAAAGACAGTAATGAGGGTGATTGGAGAAATGAGCAGGACAGGGACAGAATCACTCAACTTCCTGGTCAGCCCTCAAATGTGAACTTTGACCAATATTCTGGCTATATAACCGTAGACAGCAACGCCGGTAGAGCTCTCTTCTACTGGCTCGTTGAAGCCACAGAAAACCCATCTTCCAAGCCTCTGGTTCTATGGTTGAATGGAGGTCCTGGATGCTCCTCTGTGGCGT

Fln Alignment:

biogeco3_mira_c16771___MYMTXXXXXXXXSFQSTATSSWKDSNEGDWRNEQDRDRITQLPGQPSNVNFDQYSGYITVDSNAGRALFYWLVEATENPSSKPLVLWLNGGPGCSSVA
A9NUH4__________________VYISFVILLLLVALQSTATSTWEESNERDWRNEQAKDRITQLPGQPSNVNFAQYSGYITVDNNAGRALFYWLIEATENPSSKPLVLWLNGGPGCSSVA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain