SustainPineDB

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Assembly info
Unigenes
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SSRs
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GOs
ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene19424

Length: 227 nt

UniGene Fasta

>biog3_v1.0_unigene19424
AATGTTTTGGAAGCGTACCGTAACTCTCATATTCAACAAAGCTTTTCAGAACCCTCTCTTCCTGGTATGTCCATTGATATTCAGGAGCTTTTTAAGAAAGTCTTCACCGTCCAAGGTGTAAAAGTTTCATTTGCAGAGCCTCGGTTTCCAAGTCCTCTTATACCATCCATGGAGGAAGATGTTCTTCCTACCTACTTCCAATGGATGATACTATGGGTTTAGACATT

Ace file of the UniGene biog3_v1.0_unigene19424

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3068	1/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Sister chromatid cohesion 1 protein 2 n=4 Tax=Arabidopsis RepID=SCC12_ARATH	-	-	2.0e-22	43%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	80%
Blast2go	sister chromatid cohesion 1 protein 2	-	-	0.0	68%

Source	GOs	Term	Type	Identity
Blast2go	sister chromatid cohesion	GO:0007062	Biological Process	68%
Blast2go	mitosis	GO:0007067	Biological Process	68%
Blast2go	double-strand break repair	GO:0006302	Biological Process	68%
Blast2go	nuclear chromosome	GO:0000228	Cellular Component	68%

Source	InterPros	Term	Type	e value	Identity
Sma3	Rad21/Rec8-like protein, C-terminal, eukaryotic	IPR006909	-	0.0	-
Sma3	Rad21/Rec8-like protein, N-terminal	IPR006910	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5A868

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 213 aas, your sequence is shorter than subject: 74 - 678

Fln protein: NVLEAYRNSHIQQSFSEPSLPGMSIDIQELFKKVFTVQGVKVSFAEPRFPSPLIPSMEEDVLPTYFQWMILWV*

Protein Length: 75

Fln nts: AATGTTTTGGAAGCGTACCGTAACTCTCATATTCAACAAAGCTTTTCAGAACCCTCTCTTCCTGGTATGTCCATTGATATTCAGGAGCTTTTTAAGAAAGTCTTCACCGTCCAAGGTGTAAAAGTTTCATTTGCAGAGCCTCGGTTTCCAAGTCCTCTTATACCATCCATGGAGGAAGATGTTCTTCCTACCTACTTCCAATGGATGATACTATGGGTTTAGACATT

Fln Alignment:

biogeco3_mira_c16757___VLEAYRNSHIQQSFSEPSLPGMSIDIQELFKKVFTVQGVKVSFAEP
D5A868__________________IWKAYRNSHIQQSFSEPSLPGMSTDLQEIFKKVFTGQGVRVAFAEP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain