SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene19384

Length: 241 nt

UniGene Fasta

>biog3_v1.0_unigene19384
ATTGGCAAGTAAAGATTGTGGAACAAATGTGAAGGCGGAGACCATGGCTATGATCGAAAGAGAAGTGGCATTGAGGCAGAAATGAATGCAATAATCGATAGACTGTGTGAACCCAATGGTCCTGGCATTTCTGGCAACCTCCTTGACGCTGAAGTAAGTTTGCCAATCTCTTCCTGTTTATTATGAGAAGAAATAATCTGCTACAATTGCTGTCGTAGGGCTAGATTAGGTATTGAGTTAT

Ace file of the UniGene biog3_v1.0_unigene19384

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6511	1/2

Source	Descriptions	Term	Type	Identity
AutoFact	26S proteasome non-ATPase regulatory subunit 9 [Arabidopsis thaliana] gb\|AAM65312.1\| 26S proteasome regulatory subunit p27, putative [Arabidopsis thaliana] dbj\|BAC43064.1\| unknown protein [Arabidopsis thaliana] gb\|AAO63310.1\| At5g57950 [Arabidopsis thalia	-	-	52%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	71%
Blast2go	26s proteasome non-atpase regulatory subunit 9	-	-	69%

Source	GOs	Term	Type	e value	Identity
Blast2go	proteasome regulatory particle	GO:0005838	Cellular Component	0.0	69%
Blast2go	intracellular signal transduction	GO:0035556	Biological Process	0.0	69%

Source	InterPros	Term	Type	e value	Identity
Sma3	PDZ domain	IPR001478	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: tr_plants

Fln subject: B9HB21

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 135 aas, your sequence is shorter than subject: 35 - 211

Fln protein: MNAIIDRLCEPNGPGISGNLLDAEVSLPISSCLL*

Protein Length: 36

Fln nts: ATTGGCAAGTAAAGATTGTGGAACAAATGTGAAGGCGGAGACCATGGCTATGATCGAAAGAGAAGTGGCATTGAGGCAGAA_-_ATGAATGCAATAATCGATAGACTGTGTGAACCCAATGGTCCTGGCATTTCTGGCAACCTCCTTGACGCTGAAGTAAGTTTGCCAATCTCTTCCTGTTTATTATGAGAAGAAATAATCTGCTACAATTGCTGTCGTAGGGCTAGATTAGGTATTGAGTTAT

Fln Alignment:

biogeco3_mira_c16710___KRSGIEAEMNAIIDRLCEPNGPGISGNLLDAE
B9HB21__________________KRSALETEMNVIIDRLCQPGGPGLSGNLVDSE

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain