SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene19299

Length: 265 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene19299
GCGCTATGCAAACTTTCAGCAGATTCAGATGCTAATGTTCAAAGCGCTGCACATCTTTTAGATTCTGCACTTTCTGAATTCTTACAAGAGATAAAGAACTCTCCGTCGGTAGACTATGGGCGCATGGCTGAGATATTAGTGCTAAGGGCTAGCTCTACAGATGAGTTTACTCGGTTGACATCCATCACATGGATGAATGAATTTGTTAAGCTTGGTGGAGACCAGCTGGTTCCTTATTATGCTGATATTTTGGGAGCAATACATT

Ace file of the UniGene biog3_v1.0_unigene19299 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10169	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	pfam11916, Vac14_Fig4_bd, Vacuolar protein 14 C-terminal Fig4p binding	-	-	61%
FL-Next	tr=Putative uncharacterized protein; subsp. trichocarpa).	-	-	75%
Blast2go	protein vac14 homolog	-	-	87%

Source	GOs	Term	Type	e value	Identity
Blast2go	binding	GO:0005488	Molecular Function	0.0	87%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	0.0	87%

Source	InterPros	Term	Type	e value	Identity
Sma3	Armadillo-like helical	IPR011989	-	0.0	-
Sma3	HEAT	IPR000357	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A9PFZ0

Fln msg: Distance to subject end: 63 aas, your sequence is shorter than subject: 88 - 363

Fln protein: ALCKLSADSDANVQSAAHLLDSALSEFLQEIKNSPSVDYGRMAEILVLRASSTDEFTRLTSITWMNEFVKLGGDQLVPYYADILGAIH

Protein Length: 89

Fln nts: GCGCTATGCAAACTTTCAGCAGATTCAGATGCTAATGTTCAAAGCGCTGCACATCTTTTAGATTCTGCACTTTCTGAATTCTTACAAGAGATAAAGAACTCTCCGTCGGTAGACTATGGGCGCATGGCTGAGATATTAGTGCTAAGGGCTAGCTCTACAGATGAGTTTACTCGGTTGACATCCATCACATGGATGAATGAATTTGTTAAGCTTGGTGGAGACCAGCTGGTTCCTTATTATGCTGATATTTTGGGAGCAATACATT

Fln Alignment:

biogeco3_mira_c16597___LCKLSADSDANVQSAAHLLDSALSEFLQEIKNSPSVDYGRMAEILVLRASSTDEFTRLTSITWMNEFVKLGGDQLVPYYADILGAI
A9PFZ0__________________LFNMLSDSSHEIRQQA---DSALSEFLQEIKNSPSVDYGRMAEILVQRAASLDEFTRLTAITWINEFVKLGGEQLVPYYADILGAI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain