SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene19288

Length: 366 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene19288
AAACACTGGACTTGACAAATCCAAGCAGCTTTCGTAAGCTTGACAAACCAATGGGATGCCAAACAGTAGAAGGGAGGAAGAATTTAAGAAAAGATATGAAAGTTGGGATGATCCAGATGTTCCAAAGTTTCATTATGGTTCACACTATTCAAGTGCTGGCATTGTTTTGTTCTACCTTCTACGCTTGCCACCTTTTAGTATTGAAAACCAAACACTACAAGGTGGCCAGTTCGACCATGCTGACCGACTTTTTAACAGTGTGAGGGACACATGGTTAAGTGCTGCAGGGAAAAGCAACACATCAGATGTGAAGGAACTACTTCCAGAATTCTTTTACATGCCAGAATTCTTGGAGAACCGCTTTCA

Ace file of the UniGene biog3_v1.0_unigene19288 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene13074	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Beige/BEACH and WD40 domain-containing protein n=2 Tax=Arabidopsis thaliana RepID=F4JHT3_ARATH	-	-	81%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	62%
Blast2go	protein	-	-	79%

Source	GOs	Term	Type	Identity
Blast2go	signal transduction	GO:0007165	Biological Process	79%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	79%
Blast2go	oxidoreductase activity	GO:0016491	Molecular Function	79%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	79%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	79%
Blast2go	chloroplast	GO:0009507	Cellular Component	79%
Blast2go	mitochondrion	GO:0005739	Cellular Component	79%

Source	InterPros	Term	Type	Identity
Sma3	Phox/Bem1p	IPR000270	-	-
Sma3	Zinc finger, FYVE-type	IPR000306	-	-
Sma3	BEACH domain	IPR000409	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	Membrane attack complex component/perforin/complement C9	IPR001862	-	-
Sma3	DNA mismatch repair protein	IPR002099	-	-
Sma3	ATPase-like, ATP-binding domain	IPR003594	-	-
Sma3	DNA mismatch repair protein Mlh1	IPR011186	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	DNA mismatch repair protein, C-terminal	IPR013507	-	-
Sma3	DNA mismatch repair, conserved site	IPR014762	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	Zinc finger, FYVE-related	IPR017455	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	Glycoside hydrolase, family 1, active site	IPR018120	-	-
Sma3	Ribosomal protein S14, conserved site	IPR018271	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: F6HBI7

Fln msg: Overlapping hits, possible frame ERROR between 92 and 74, Distance to subject end: 452 aas, your sequence is shorter than subject: 121 - 3534

Fln protein: TLDLTNPSSFRKLDKPMGCQTVExxxxxxxxYESWDDPDVPKFHYGSHYSSAGIVLFYLLRLPPFSIENQTLQGGQFDHADRLFNSVRDTWLSAAGKSNTSDVKELLPEFFYMPEFLENRF

Protein Length: 122

Fln nts: AAACACTGGACTTGACAAATCCAAGCAGCTTTCGTAAGCTTGACAAACCAATGGGATGCCAAACAGTAGAAxxxxxxxxxxxxxxxxxxxxxxxxTATGAAAGTTGGGATGATCCAGATGTTCCAAAGTTTCATTATGGTTCACACTATTCAAGTGCTGGCATTGTTTTGTTCTACCTTCTACGCTTGCCACCTTTTAGTATTGAAAACCAAACACTACAAGGTGGCCAGTTCGACCATGCTGACCGACTTTTTAACAGTGTGAGGGACACATGGTTAAGTGCTGCAGGGAAAAGCAACACATCAGATGTGAAGGAACTACTTCCAGAATTCTTTTACATGCCAGAATTCTTGGAGAACCGCTTTCA

Fln Alignment:

biogeco3_mira_c16581___LDLTNPSSFRKLDKPMGCQTVEGxxxxxxRYESWDDPDVPKFHYGSHYSSAGIVLFYLLRLPPFSIENQTLQGGQFDHADRLFNSVRDTWLSAAGKSNTSDVKELLPEFFYMPEFLENRF
F6HBI7__________________LDLSDPKTFRKLEKPMGCQTLEGxxxxxxRYESWDDPEVPKFHYGSHYSSAGIVLFYLLRLPPFSAENQKLQGGQFDHADRLFNSVRDTWLSAAGKGNTSDVKELIPEFFYMPEFLENRF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain