SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene19263

Length: 326 nt

UniGene Fasta

>biog3_v1.0_unigene19263
GAATATAACACTCTGGTTTGGCGGTTATTTTTGTTGTTAGGCGTGAAGTTCCATTTCTACTGAAAATCCGCAGCTGTTGAATGTTTTTACTCTTGTGGTGGCAAAGGCCATGTACGGTTATTTTCAGTGGATTGGCTGAGAATGAGCCATTAATGAAGTCTCAGCGCTGGTAAAATTAGTTCGAAGGTTTTTCGTGGACAGTAAGGGAGTAGGAAAGGATGGTGAGGATAACGGCAGACTTAATTTATCGCTGTCCGCAATATTTCAATCCAGTACGCGAGCGGGAGCTTGACCTTCGTGGCAATAAAATTGCAGTTATCGAGAAC

Ace file of the UniGene biog3_v1.0_unigene19263

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene24919	1/2
SustainPine v2.0	sp_v2.0_unigene78642	1/2

Source	Descriptions	Term	Type	Identity
AutoFact	U2 small nuclear ribonucleoprotein A n=1 Tax=Gossypium hirsutum RepID=D6N3G9_GOSHI	-	-	51%
FL-Next	sp=U2 small nuclear ribonucleoprotein A'; Arabidopsis thaliana (Mouse-ear cress).	-	-	69%
Blast2go	u2 small nuclear ribonucleoprotein a	-	-	78%

Source	GOs	Term	Type	Identity
Blast2go	response to cold	GO:0009409	Biological Process	78%
Blast2go	nuclear mRNA splicing, via spliceosome	GO:0000398	Biological Process	78%
Blast2go	nucleolus	GO:0005730	Cellular Component	78%
Blast2go	Cajal body	GO:0015030	Cellular Component	78%
Blast2go	chloroplast	GO:0009507	Cellular Component	78%

Source	InterPros	Term	Type	e value	Identity
Sma3	U2A'/phosphoprotein 32 family A, C-terminal	IPR003603	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: sp_plants

Fln subject: P43333

Fln msg: Distance to subject end: 213 aas, your sequence is shorter than subject: 36 - 249

Fln protein: MVRITADLIYRCPQYFNPVRERELDLRGNKIAVIEN

Protein Length: 37

Fln nts: GAATATAACACTCTGGTTTGGCGGTTATTTTTGTTGTTAGGCGTGAAGTTCCATTTCTACTGAAAATCCGCAGCTGTTGAATGTTTTTACTCTTGTGGTGGCAAAGGCCATGTACGGTTATTTTCAGTGGATTGGCTGAGAATGAGCCATTAATGAAGTCTCAGCGCTGGTAAAATTAGTTCGAAGGTTTTTCGTGGACAGTAAGGGAGTAGGAAAGG_-_ATGGTGAGGATAACGGCAGACTTAATTTATCGCTGTCCGCAATATTTCAATCCAGTACGCGAGCGGGAGCTTGACCTTCGTGGCAATAAAATTGCAGTTATCGAGAAC

Fln Alignment:

biogeco3_mira_c16543___MVRITADLIYRCPQYFNPVRERELDLRGNKIAVIEN
P43333__________________MVKLTADLIWKSPHFFNAIKERELDLRGNKIPVIEN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain