SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene19226

Length: 233 nt

UniGene Fasta

>biog3_v1.0_unigene19226
AATGTAGATGATATCTCTGATTTGCAGACATGGGTAAGCTCATCTCTGACATATCACACCACATGCTTTGATGGGCTCGGTAATACAGAAGGAAATCCCATTGATTACATCATGGAAGAGGGCAATAATGTGTCTCAACTCTTGAGTAATTGTTTGTCTCTCATCAAGGCTTTGCCAATGTTGGTAGGAGGGTCTGCAACTCCACCACATTCAAGGCGTTTGCTTTCGGATGT

Ace file of the UniGene biog3_v1.0_unigene19226

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3201	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Pectinesterase n=3 Tax=Oryza sativa RepID=B9EVS6_ORYSJ	-	-	44%
FL-Next	sp=Pectinesterase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	39%
Blast2go	pectinesterase ppe8b precursor	-	-	61%

Source	GOs	Term	Type	e value	Identity
Blast2go	hydrolase activity	GO:0016787	Molecular Function	0.0	61%
Blast2go	cell part	GO:0044464	Cellular Component	0.0	61%

Source	InterPros	Term	Type	Identity
Sma3	Pectinesterase, catalytic	IPR000070	-	-
Sma3	Ribosome-binding factor A	IPR000238	-	-
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Pectinesterase inhibitor	IPR006501	-	-
Sma3	Carbohydrate-binding/sugar hydrolysis domain	IPR006633	-	-
Sma3	Pectin lyase fold	IPR012334	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3	Pectinesterase, active site	IPR018040	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NVV0

Fln msg: Distance to subject end: 337 aas, your sequence is shorter than subject: 77 - 557

Fln protein: NVDDISDLQTWVSSSLTYHTTCFDGLGNTEGNPIDYIMEEGNNVSQLLSNCLSLIKALPMLVGGSATPPHSRRLLSD

Protein Length: 78

Fln nts: AATGTAGATGATATCTCTGATTTGCAGACATGGGTAAGCTCATCTCTGACATATCACACCACATGCTTTGATGGGCTCGGTAATACAGAAGGAAATCCCATTGATTACATCATGGAAGAGGGCAATAATGTGTCTCAACTCTTGAGTAATTGTTTGTCTCTCATCAAGGCTTTGCCAATGTTGGTAGGAGGGTCTGCAACTCCACCACATTCAAGGCGTTTGCTTTCGGATGT

Fln Alignment:

biogeco3_mira_c16492___DDISDLQTWVSSSLTYHTTCFDGLGNTEGNPIDYIMEEG-NNVSQLLSNCLSLIKA
A9NVV0__________________EQASDLQTWLSASITNQDTCLDGISDYSKSIARALVENSVQNVRKLISNSLAIAKA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain