SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene19193

Length: 247 nt

UniGene Fasta

>biog3_v1.0_unigene19193
AATGTCTTTGTACAGTGGGGGAAGAGGTTCAAGCACGGGCTCCGTGGGGTTTCCAAGAACATGGAGAAGGCTCTCCACTGCTTTCTCAAGGGCGCTGCCCGTGGCTCTGCCGCTGCCATGGTCGATGCCGGCCTCCTTCTCTGGGAAATGGGGAAGAAGGCCGAGGCAGTTGAGCTTTACAGAGCAGCGGCCGAACTAGGCGATCCAGCAGGACAGTGCAATCTTGGTCTTTCCTTCCTCCAAGTGG

Ace file of the UniGene biog3_v1.0_unigene19193

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3884	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	F-box protein [Arabidopsis thaliana] sp\|Q94C27.1\|FB84_ARATH RecName: Full=F-box protein At1g70590 gb\|AAK59789.1\| At1g70590/F5A18_23 [Arabidopsis thaliana] gb\|AAO11593.1\| At1g70590/F5A18_23 [Arabidopsis thaliana] gb\|AEE35086.1\| F-box protein [Arabidopsis t	-	-	50%
FL-Next	sp=F-box protein At1g70590; Arabidopsis thaliana (Mouse-ear cress).	-	-	61%
Blast2go	f-box protein	-	-	70%

Source	GOs	Term	Type	Identity
Blast2go	binding	GO:0005488	Molecular Function	70%
Blast2go	mitochondrion	GO:0005739	Cellular Component	70%
Blast2go	plastid	GO:0009536	Cellular Component	70%

Source	InterPros	Term	Type	Identity
Sma3	Armadillo	IPR000225	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Sel1-like	IPR006597	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Tetratricopeptide repeat-containing domain	IPR013026	-	-
Sma3	Tetratricopeptide repeat	IPR019734	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q94C27

Fln msg: Distance to subject end: 164 aas, your sequence is shorter than subject: 82 - 351

Fln protein: NVFVQWGKRFKHGLRGVSKNMEKALHCFLKGAARGSAAAMVDAGLLLWEMGKKAEAVELYRAAAELGDPAGQCNLGLSFLQV

Protein Length: 83

Fln nts: AATGTCTTTGTACAGTGGGGGAAGAGGTTCAAGCACGGGCTCCGTGGGGTTTCCAAGAACATGGAGAAGGCTCTCCACTGCTTTCTCAAGGGCGCTGCCCGTGGCTCTGCCGCTGCCATGGTCGATGCCGGCCTCCTTCTCTGGGAAATGGGGAAGAAGGCCGAGGCAGTTGAGCTTTACAGAGCAGCGGCCGAACTAGGCGATCCAGCAGGACAGTGCAATCTTGGTCTTTCCTTCCTCCAAGTGG

Fln Alignment:

biogeco3_mira_c16450___VFVQWGKRFKHGLRGVSKNMEKALHCFLKGAARGSAAAMVDAGLLLWEMGKKAEAVELYRAAAELGDPAGQCNLGLSFLQV
Q94C27__________________LLIRWGKKYKHGRGGVRANLDKALDSFLKGAMRGSTLAMVDAGLVYWERGEKEKAVNLYRRASELGDAVGQCNLGIAYLQV

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain