SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene19184

Length: 349 nt

UniGene Fasta

>biog3_v1.0_unigene19184
AGCAATGGGAAGTTTCACAACCAGATGCAAGACTAGGATTACCCTTGCCAAATATGTTTATACCTACAGACTTAATGCTCAAACAAATTGTGGAAAAGGTCGAACATCCTGTGTTGCTGTGGAAATCTGAATTTTCAAGGTTATGGTATAAGCCAGATACAATGTTCTTTACACCGAAGGCTTACGTCAAGCTGGATTTCAACTGTCCTGAATCAAATTGTTCACCAGAAGCAGAAGTTCTAACACAGATTTTTACAATGTTATTGATGGATTACTTAAATGAATATGCTTATTATGCCAGGGTTGCTGGACTTTCTTATGGTATTCATCACACTGGTACAGGGTTCCA

Ace file of the UniGene biog3_v1.0_unigene19184

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5501	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	insulin degrading enzyme [Solanum lycopersicum]	-	-	57%
FL-Next	sp=Zinc-metallopeptidase, peroxisomal; Arabidopsis thaliana (Mouse-ear cress).	-	-	66%
Blast2go	insulin degrading enzyme	-	-	75%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Acting on peptide bonds (peptide hydrolases), Metalloendopeptidases.	EC:3.4.24.-	-	0.0	75%

Source	GOs	Term	Type	Identity
Blast2go	proteolysis	GO:0006508	Biological Process	75%
Blast2go	metal ion binding	GO:0046872	Molecular Function	75%
Blast2go	metalloendopeptidase activity	GO:0004222	Molecular Function	75%
Blast2go	plastid	GO:0009536	Cellular Component	75%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Copper amine oxidase	IPR000269	-	-
Sma3	Peptidase M16, zinc-binding site	IPR001431	-	-
Sma3	Peptidase M16, C-terminal	IPR007863	-	-
Sma3	Peptidase M16, core	IPR011237	-	-
Sma3	Peptidase M16, N-terminal	IPR011765	-	-
Sma3	Copper amine oxidase, C-terminal	IPR015798	-	-
Sma3	Copper amine oxidase, N2-terminal	IPR015800	-	-
Sma3	Copper amine oxidase, N2/N3-terminal	IPR015801	-	-
Sma3	Copper amine oxidase, N3-terminal	IPR015802	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: O22941

Fln msg: Distance to subject end: 382 aas, your sequence is shorter than subject: 115 - 970

Fln protein: QWEVSQPDARLGLPLPNMFIPTDLMLKQIVEKVEHPVLLWKSEFSRLWYKPDTMFFTPKAYVKLDFNCPESNCSPEAEVLTQIFTMLLMDYLNEYAYYARVAGLSYGIHHTGTGF

Protein Length: 116

Fln nts: AGCAATGGGAAGTTTCACAACCAGATGCAAGACTAGGATTACCCTTGCCAAATATGTTTATACCTACAGACTTAATGCTCAAACAAATTGTGGAAAAGGTCGAACATCCTGTGTTGCTGTGGAAATCTGAATTTTCAAGGTTATGGTATAAGCCAGATACAATGTTCTTTACACCGAAGGCTTACGTCAAGCTGGATTTCAACTGTCCTGAATCAAATTGTTCACCAGAAGCAGAAGTTCTAACACAGATTTTTACAATGTTATTGATGGATTACTTAAATGAATATGCTTATTATGCCAGGGTTGCTGGACTTTCTTATGGTATTCATCACACTGGTACAGGGTTCCA

Fln Alignment:

biogeco3_mira_c16438___QWEVSQPDARLGLPLPNMFIPTDLMLKQIVEKVEHPVLLWKSEFSRLWYKPDTMFFTPKAYVKLDFNCPESNCSPEAEVLTQIFTMLLMDYLNEYAYYARVAGLSYGIHHTGTGF
O22941__________________EWVQSAPDVHLHLPAPNVFIPTDLSLKDADDKETVPVLLRKTPFSRLWYKPDTMFSKPKAYVKMDFNCPLAVSSPDAAVLTDIFTRLLMDYLNEYAYYAQVAGLYYGVSLSDNGF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain