SustainPineDB

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Assembly info
Unigenes
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SSRs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene19183

Length: 307 nt

UniGene Fasta

>biog3_v1.0_unigene19183
ATGTTGAATCTGGTTGCAATACACTGGTAAACTATGAGTCTACACGCATAAGGACAAACAAAGCCACCCAACTAGCTGTCAGTCCTAATTCATCATTAGTATTTGTTCCATGTTTGACAGCTATTCAGGCATATGATGTGTGGAGTGGTCGCCTTTGCTCAACATTTCATGGCCACTATGACTTTATAAATTGCTGTTCATTCAACCCTCAGGATTAGGAGTTGTATAGTGGGGGTAATGATCGTCAAATACTAATATGGTCTCCACCAGCCGTGGTATCTCTTGAGGAGGATGAAAAGCATTTAAA

Ace file of the UniGene biog3_v1.0_unigene19183

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene27721	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	WD-repeat protein, putative n=1 Tax=Ricinus communis RepID=B9R702_RICCO	-	-	58%
FL-Next	tr=WD-repeat protein, putative; Ricinus communis (Castor bean).	-	-	58%
Blast2go	dna excision repair protein ercc-8-like	-	-	73%

Source	InterPros	Term	Type	Identity
Sma3	WD40 repeat	IPR001680	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: tr_plants

Fln subject: B9R702

Fln msg: STOP codon was not found. Distance to subject end: 5 aas, your sequence is shorter than subject: 101 - 479

Fln protein: VESGCNTLVNYESTRIRTNKATQLAVSPNSSLVFVPCLTAIQAYDVWSGRLCSTFHGHYDFINCCSFNPQD*ELYSGGNDRQILIWSPPAVVSLEEDEKHL

Protein Length: 102

Fln nts: ATGTTGAATCTGGTTGCAATACACTGGTAAACTATGAGTCTACACGCATAAGGACAAACAAAGCCACCCAACTAGCTGTCAGTCCTAATTCATCATTAGTATTTGTTCCATGTTTGACAGCTATTCAGGCATATGATGTGTGGAGTGGTCGCCTTTGCTCAACATTTCATGGCCACTATGACTTTATAAATTGCTGTTCATTCAACCCTCAGGATTAGGAGTTGTATAGTGGGGGTAATGATCGTCAAATACTAATATGGTCTCCACCAGCCGTGGTATCTCTTGAGGAGGATGAAAAGCATTTAAA

Fln Alignment:

biogeco3_mira_c16437___VESGCNTLVNYESTRIRTNKATQLAVSPNSSLVFVPCLTAIQAYDVWSGRLCSTFHGHYDFINCCSFNPQD*ELYSGGNDRQILIWSPPAVVSLE
B9R702__________________LESGCNTLVNFETVRLQTSKAIQLATTQDSSLVFVPCMTAVKAFDLWSGMTSMTFRGHYEYVNCCWYSSQDQEIYTGGNDRQILVWCPPRLIDME

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain