SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene19180

Length: 306 nt

UniGene Fasta

>biog3_v1.0_unigene19180
AATGTTTATTTTTGTAGCAGCTGAAGTTGCTCCATACTCAAAAACAGGAGGTCTTGGAGATGTCTGTGGTTCTCTACCTATTGCCCTTGCTGCTCGAGGCCATCGTGTGTTGGTAATATCTCCAAGATATTTGAATGGTGTGACAGATAAGAAGTACAGTGGGGCTTTTGATGTTCAGTGTCGCATTAAAATCATGTGCTTTGGTGGGGAACATCAAGTCGCATTTTTTCATGAGTACAGGGCAGGCGTTGATTGGGTATTTGTTGATCATCCTTCTTTTCACCGGCCTGGTAATCCATATGGTGA

Ace file of the UniGene biog3_v1.0_unigene19180

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8882	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	starch synthase I [Zea mays] gb\|AAB99957.2\| plastid starch synthase I precursor [Zea mays]	-	-	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	54%
Blast2go	soluble starch synthase i	-	-	84%

Source	ECs	Term	Type	e value	Identity
Blast2go	Starch synthase.	EC:2.4.1.21	-	0.0	84%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Starch and sucrose metabolism	00500		0.0	84%
Blast2go	Metabolic pathways	01100		0.0	84%

Source	GOs	Term	Type	Identity
Blast2go	amylopectin biosynthetic process	GO:0010021	Biological Process	84%
Blast2go	salicylic acid mediated signaling pathway	GO:0009863	Biological Process	84%
Blast2go	defense response, incompatible interaction	GO:0009814	Biological Process	84%
Blast2go	glycogen biosynthetic process	GO:0005978	Biological Process	84%
Blast2go	starch synthase activity	GO:0009011	Molecular Function	84%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	84%

Source	InterPros	Term	Type	Identity
Sma3	Dihydroxy-acid/6-phosphogluconate dehydratase	IPR000581	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Glycosyl transferase, family 1	IPR001296	-	-
Sma3	Aminotransferase, class-II, pyridoxal-phosphate binding site	IPR001917	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	Phosphotransferase system, HPr serine phosphorylation site	IPR002114	-	-
Sma3	Glycogen/starch synthases, ADP-glucose type	IPR011835	-	-
Sma3	Starch synthase, catalytic domain	IPR013534	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LR42

Fln msg: Distance to subject end: 267 aas, your sequence is shorter than subject: 101 - 459

Fln protein: MFIFVAAEVAPYSKTGGLGDVCGSLPIALAARGHRVLVISPRYLNGVTDKKYSGAFDVQCRIKIMCFGGEHQVAFFHEYRAGVDWVFVDHPSFHRPGNPYG

Protein Length: 102

Fln nts: AATGTTTATTTTTGTAGCAGCTGAAGTTGCTCCATACTCAAAAACAGGAGGTCTTGGAGATGTCTGTGGTTCTCTACCTATTGCCCTTGCTGCTCGAGGCCATCGTGTGTTGGTAATATCTCCAAGATATTTGAATGGTGTGACAGATAAGAAGTACAGTGGGGCTTTTGATGTTCAGTGTCGCATTAAAATCATGTGCTTTGGTGGGGAACATCAAGTCGCATTTTTTCATGAGTACAGGGCAGGCGTTGATTGGGTATTTGTTGATCATCCTTCTTTTCACCGGCCTGGTAATCCATATGGTGA

Fln Alignment:

biogeco3_mira_c16431___IFVAAEVAPYSKTGGLGDVCGSLPIALAARGHRVLVISPRYLNGVTDKKYSGAFDVQCRIKIMCFGGEHQVAFFHEYRAGVDWVFVDHPSF
B8LR42__________________VFVSAEVAPWSKTGGLGDVLGGLPPALAARGHRVMTVSPRY------DQYKDSWDTGVSIDIKVGDKTESVRFFHIYKRGVDRIFVDHPWF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain