SustainPineDB

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Assembly info
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene19159

Length: 262 nt

UniGene Fasta

>biog3_v1.0_unigene19159
AATGTGACGTTCTTCGTGGATCACGTACAAAGAAACTGACACAGAATCAGTTTGACAAGCTTCCTGTACATGGTTTGGGTAAAACCTATTCATCAAACTGGTGGAAGGCACTTGGTGACCAACTAATCAACCTTGGTTATTTAGAAGAAACAGTAATTGACATTACAGGACCATCAGTCACCAAGGTCAACAGTTCCTTCAATTGGCAAGTCACAAAAGCCAGCCCTCACTTATATTACGACTAACTCCTGAGATGATCAGT

Ace file of the UniGene biog3_v1.0_unigene19159

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene69450	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATP-dependent DNA helicase [Nodularia spumigena CCY9414] gb\|EAW45861.1\| ATP-dependent DNA helicase [Nodularia spumigena CCY9414]	-	-	1.0e-06	40%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	0.0	69%
Blast2go	atp-dependent dna helicase	-	-	2.75421e-16	71%

Source	InterPros	Term	Type	Identity
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	Helicase/RNase D C-terminal, HRDC domain	IPR002121	-	-
Sma3	DNA helicase, ATP-dependent, RecQ type	IPR004589	-	-
Sma3	DNA/RNA helicase, DEAD/DEAH box type, N-terminal	IPR011545	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3		IPR014021	-	-
Sma3		IPR018329	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9I791

Fln msg: Separated hits, possible frame ERROR between 161 and 173, Distance to subject end: 371 aas, your sequence is shorter than subject: 87 - 854

Fln protein: CDVLRGSRTKKLTQNQFDKLPVHGLGKTYSSNWWKALGDQLINLGYLEETVIxxxxxISHQGQQFLQLASHKSQPSLILRLTPEMIS

Protein Length: 88

Fln nts: AATGTGACGTTCTTCGTGGATCACGTACAAAGAAACTGACACAGAATCAGTTTGACAAGCTTCCTGTACATGGTTTGGGTAAAACCTATTCATCAAACTGGTGGAAGGCACTTGGTGACCAACTAATCAACCTTGGTTATTTAGAAGAAACAGTAATTGAxxxxxxxxxxxxCATCAGTCACCAAGGTCAACAGTTCCTTCAATTGGCAAGTCACAAAAGCCAGCCCTCACTTATATTACGACTAACTCCTGAGATGATCAGT

Fln Alignment:

biogeco3_mira_c16402___DVLRGSRTKKLTQNQFDKLPVHGLGKTYSSNWWKALGDQLINLGYLEETVIDxxxxISHQGQQFLQLASHKSQPSLILRLTPEMI
B9I791__________________DVLRGSRAKKILNAHFDKLPFHGLGKDYSSNWWKSLAYQLISHGYLMETFRDxxxxVSPKGKQYIQSARPDHQPALILPLTDEMV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain