SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene19137

Length: 238 nt

UniGene Fasta

>biog3_v1.0_unigene19137
AATGTACATTGGCGTGCATTTCCAGCTGCCTCAGGTAGCTATTGCGACAGCGATTTTATTTTGCCATCGCTTCTATATGCGACAGTCCCACAGAACAAATGACAGATATATTATTGGGACTGCATGTATGGTCCTTGCTACTAAGGTAGAAGAAGTTGCTTTTCTCTTCGAGATGCGACAATGCTGTCCTATGAATATCGGCACAAGAGGGACCCAACTGCTGCTGAACGTATTAGAC

Ace file of the UniGene biog3_v1.0_unigene19137

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8258	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Cyclin-T1-4 n=2 Tax=Oryza sativa Japonica Group RepID=CCT14_ORYSJ	-	-	54%
FL-Next	sp=Cyclin-T1-4; Oryza sativa subsp. japonica (Rice).	-	-	65%
Blast2go	protein	-	-	74%

Source	ECs	Term	Type	e value	Identity
Blast2go	Cyclin-dependent kinase.	EC:2.7.11.22	-	0.0	74%

Source	GOs	Term	Type	Identity
Blast2go	regulation of cell cycle	GO:0051726	Biological Process	74%
Blast2go	leaf development	GO:0048366	Biological Process	74%
Blast2go	trichome morphogenesis	GO:0010090	Biological Process	74%
Blast2go	response to virus	GO:0009615	Biological Process	74%
Blast2go	cyclin-dependent protein kinase activity	GO:0004693	Molecular Function	74%
Blast2go	nucleus	GO:0005634	Cellular Component	74%

Source	InterPros	Term	Type	Identity
Sma3	Cyclin, C-terminal	IPR004367	-	-
Sma3		IPR006670	-	-
Sma3	Cyclin, N-terminal	IPR006671	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Cyclin-like	IPR013763	-	-
Sma3	Cyclin C/H/T/L	IPR015429	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q2QQS5

Fln msg: Separated hits, possible frame ERROR between 154 and 166, Distance to subject end: 394 aas, your sequence is shorter than subject: 79 - 543

Fln protein: MYIGVHFQLPQVAIATAILFCHRFYMRQSHRTNDRYIIGTACMVLATKVExxxxxLRDATMLSYEYRHKRDPTAAERIR

Protein Length: 80

Fln nts: AATGTACATTGGCGTGCATTTCCAGCTGCCTCAGGTAGCTATTGCGACAGCGATTTTATTTTGCCATCGCTTCTATATGCGACAGTCCCACAGAACAAATGACAGATATATTATTGGGACTGCATGTATGGTCCTTGCTACTAAGGTAGAAGAxxxxxxxxxxxxTCTTCGAGATGCGACAATGCTGTCCTATGAATATCGGCACAAGAGGGACCCAACTGCTGCTGAACGTATTAGAC

Fln Alignment:

biogeco3_mira_c16373___IGVHFQLPQVAIATAILFCHRFYMRQSHRTNDRYIIGTACMVLATKVEExxxxLRDATMLSYEYRHKRDPTAAERIR
Q2QQS5__________________LGMRLKVPQVTIATAIVFCHRFYLRQSHAKNDRRTIATVCMFLAGKVEExxxxLKDVILVSYEIIHKKDPAAGQRIK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain