SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene19129

Length: 557 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene19129
CTCGCTGAGTCCTGGAGCCATGAATCTAATTGAATCCATTTGGTCGATCATGTCATTTCTATTGATTTTGAAAACATAATTGTCTTGTTGGACAAGGTGTCAAGATAGTTTACAAAAGATCTAATTTAAAGGTTCACTCTTCTGATTCTCCATTGACAAGATGAGCAACTCAAGAGCAAGTCAGCTCCAGCCATTGTCAGTCCCCAAATCCGAGTTTACGTGTTACAAGACCCCAAAGACTTGGTTCACAAGTCCTGTTTCTGTTGAAACAAGTCCGTTGAAACTGGAAAGCCCCATTGATTTTGAGATATTGGAGAGAGCATCTCCTTCAGCACGGTTTGGCATGGATATAGGTGGCACACTCTGCAAAGTTGTCTACTTTGAGCCAGCTAGAGAATTGTTCTCTCCAGGTGTGAATTTTGGCCAGAGTAGGAATGATACCAAATCTGTGAAACTCTGTGAAAATGATACAACAAAAATGGACAAAGGCAGAGGAAGGGTTAGTGCATTTGGTAAACCATCTGAAGATATGGATTCAGAGCCACCTTCAGAACATT

Ace file of the UniGene biog3_v1.0_unigene19129 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene21877	6/6

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pantothenate kinase 2 (Hallervorden-Spatz syndrome) [Rattus norvegicus] gb\|EDL80236.1\| pantothenate kinase 2 (Hallervorden-Spatz syndrome) (predicted), isoform CRA_a [Rattus norvegicus]	-	-	5.04467e-44	52%
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	0.0	60%
Blast2go	pantothenate kinase 1	-	-	0.0	71%

Source	ECs	Term	Type	e value	Identity
Blast2go	Pantothenate kinase.	EC:2.7.1.33	-	0.0	71%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Pantothenate and CoA biosynthesis	00770		0.0	71%
Blast2go	Metabolic pathways	01100		0.0	71%

Source	GOs	Term	Type	Identity
Blast2go	phosphorylation	GO:0016310	Biological Process	71%
Blast2go	protein binding	GO:0005515	Molecular Function	71%
Blast2go	pantothenate kinase activity	GO:0004594	Molecular Function	71%
Blast2go	cytosol	GO:0005829	Cellular Component	71%
Blast2go	mitochondrion	GO:0005739	Cellular Component	71%
Blast2go	nucleolus	GO:0005730	Cellular Component	71%

Source	InterPros	Term	Type	Identity
Sma3	Domain of unknown function DUF89	IPR002791	-	-
Sma3	Type II pantothenate kinase	IPR004567	-	-
Sma3	Pantothenate kinase, bacterial	IPR011602	-	-
Sma3	Pantothenate kinase, acetyl-CoA regulated, two-domain type	IPR015844	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A9RE48

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 432 aas, your sequence is shorter than subject: 185 - 659

Fln protein: SLSPGAMNLIESIWSIMSFLLILKT*LSCWTRCQDSLQKI*FKGSLF*FSIDKMSNSRASQLQPLSVPKSEFTCYKTPKTWFTSPVSVETSPLKLESPIDFEILERASPSARFGMDIGGTLCKVVYFEPARELFSPGVNFGQSRNDTKSVKLCENDTTKMDKGRGRVSAFGKPSEDMDSEPPSEH

Protein Length: 186

Fln nts: CTCGCTGAGTCCTGGAGCCATGAATCTAATTGAATCCATTTGGTCGATCATGTCATTTCTATTGATTTTGAAAACATAATTGTCTTGTTGGACAAGGTGTCAAGATAGTTTACAAAAGATCTAATTTAAAGGTTCACTCTTCTGATTCTCCATTGACAAGATGAGCAACTCAAGAGCAAGTCAGCTCCAGCCATTGTCAGTCCCCAAATCCGAGTTTACGTGTTACAAGACCCCAAAGACTTGGTTCACAAGTCCTGTTTCTGTTGAAACAAGTCCGTTGAAACTGGAAAGCCCCATTGATTTTGAGATATTGGAGAGAGCATCTCCTTCAGCACGGTTTGGCATGGATATAGGTGGCACACTCTGCAAAGTTGTCTACTTTGAGCCAGCTAGAGAATTGTTCTCTCCAGGTGTGAATTTTGGCCAGAGTAGGAATGATACCAAATCTGTGAAACTCTGTGAAAATGATACAACAAAAATGGACAAAGGCAGAGGAAGGGTTAGTGCATTTGGTAAACCATCTGAAGATATGGATTCAGAGCCACCTTCAGAACATT

Fln Alignment:

biogeco3_mira_c16363___PVSVETSPLKLESPIDFEILERASPSARFGMDIGGTLCKVVYFEP
A9RE48__________________PLHMTPPPDSLVSPVDSSFLEGASSLARFGLDIGGTLCKVVFFEP

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
82			33	66	0.997461
85			66	33	0.997453
394	25		75		0.996473
398		75		25	0.996473
425		33		66	0.997452
440		33	66		0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain