SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene19118

Length: 229 nt

UniGene Fasta

>biog3_v1.0_unigene19118
CTAGANAACCCACTTATGCAAGAACAGATGACTGCTAGGCAACAGTTTATATATACTGCAAAGCAGATGGGAAGTAGGAGTTGGGGTTCAGCCAAGGCATTTGCAATCATGGGATTGATTTTTTCAGGTGTAGAATGTGCTGTGGAGAAGGCAAGGGCTAAACATGATACAACTAATACCGCAGTTGCTGGCTGTGTTACTGGCGGAACCTTATCTGCCAGAGGACATT

Ace file of the UniGene biog3_v1.0_unigene19118

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene981	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Tim17 domain-containing protein [Arabidopsis thaliana] gb\|ABN04776.1\| At3g10110 [Arabidopsis thaliana] gb\|AEE74859.1\| Tim17 domain-containing protein [Arabidopsis thaliana]	-	-	9.80909e-45	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	50%
Blast2go	mitochondrial import inner membrane translocase subunit tim22	-	-	0.0	85%

Source	GOs	Term	Type	Identity
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	85%
Blast2go	protein transport	GO:0015031	Biological Process	85%
Blast2go	P-P-bond-hydrolysis-driven protein transmembrane transporter activity	GO:0015450	Molecular Function	85%
Blast2go	mitochondrial inner membrane presequence translocase complex	GO:0005744	Cellular Component	85%
Blast2go	integral to membrane	GO:0016021	Cellular Component	85%
Blast2go	chloroplast	GO:0009507	Cellular Component	85%

Source	InterPros	Term	Type	e value	Identity
Sma3	Mitochondrial inner membrane translocase subunit Tim17/Tim22/Tim23/peroxisomal protein PMP24	IPR003397	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NRL1

Fln msg: Distance to subject end: 82 aas, your sequence is shorter than subject: 76 - 208

Fln protein: LENPLMQEQMTARQQFIYTAKQMGSRSWGSAKAFAIMGLIFSGVECAVEKARAKHDTTNTAVAGCVTGGTLSARGH

Protein Length: 77

Fln nts: CTAGAaAACCCACTTATGCAAGAACAGATGACTGCTAGGCAACAGTTTATATATACTGCAAAGCAGATGGGAAGTAGGAGTTGGGGTTCAGCCAAGGCATTTGCAATCATGGGATTGATTTTTTCAGGTGTAGAATGTGCTGTGGAGAAGGCAAGGGCTAAACATGATACAACTAATACCGCAGTTGCTGGCTGTGTTACTGGCGGAACCTTATCTGCCAGAGGACATT

Fln Alignment:

biogeco3_mira_c16351___SAKAFAIMGLIFSGVECAVEKARAKHDTTNTAVAGCVTGGTLSARG
A9NRL1__________________SAKTFAILSGVHSLVVCYLKKLRGKDDVINAGVAGCITGLALSMPG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain