SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene19117

Length: 239 nt

UniGene Fasta

>biog3_v1.0_unigene19117
AATGTTTCTCTTTTCTGCTGTTCTTTAGATGGAACTGTGGCTACTTTCCATTTTGAGAACAAAGAATTGGGTGACAAGATTTCGGATACTGAGTTAGATGAATTTAAAAAGAGTCGATATGGGGATGTGAGAGGTCGTCAAACAAACTTGGCCGAAAGTCCTGCCCAGTTGTTGCTTGAAGCAGTAGCAGCAAAGCAATCTGTAATCAAAAAGGCGATTACAGGTTCCCAGCGTGGTAA

Ace file of the UniGene biog3_v1.0_unigene19117

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene29424	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RecName: Full=Protein HIRA; AltName: Full=Histone regulator protein emb\|CAB88535.1\| WD repeat domain protein [Arabidopsis thaliana]	-	-	2.00386e-43	57%
FL-Next	sp=Protein HIRA; Oryza sativa subsp. japonica (Rice).	-	-	0.0	70%
Blast2go	protein hira	-	-	0.0	70%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	0.0	70%
Blast2go	nucleus	GO:0005634	Cellular Component	0.0	70%

Source	InterPros	Term	Type	Identity
Sma3	WD40 repeat	IPR001680	-	-
Sma3	TUP1-like enhancer of split	IPR011494	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q652L2

Fln msg: Distance to subject end: 547 aas, your sequence is shorter than subject: 79 - 975

Fln protein: NVSLFCCSLDGTVATFHFENKELGDKISDTELDEFKKSRYGDVRGRQTNLAESPAQLLLEAVAAKQSVIKKAITGSQRG

Protein Length: 80

Fln nts: AATGTTTCTCTTTTCTGCTGTTCTTTAGATGGAACTGTGGCTACTTTCCATTTTGAGAACAAAGAATTGGGTGACAAGATTTCGGATACTGAGTTAGATGAATTTAAAAAGAGTCGATATGGGGATGTGAGAGGTCGTCAAACAAACTTGGCCGAAAGTCCTGCCCAGTTGTTGCTTGAAGCAGTAGCAGCAAAGCAATCTGTAATCAAAAAGGCGATTACAGGTTCCCAGCGTGGTAA

Fln Alignment:

biogeco3_mira_c16350___SLFCCSLDGTVATFHFENKELGDKISDTELDEFKKSRYGDVRGRQTNLAESPAQLLLEAVAAKQSVIKKAITGSQ
Q652L2__________________SLFACSLDGSVATFHFEAKELGYRLRDAELDELKKNRYGDVRGRQSNIAESPAQLLLEEASAKQSASKKVSSVQQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain