SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene19049

Length: 224 nt

UniGene Fasta

>biog3_v1.0_unigene19049
AATGTTGACTGTTGTAGTTTATCCACTAGGAGGAGATACAATTTCAGTTACTAAGGGTGTAGTTTCACGTATTGAGGTGACATCATATGCACATGGAGCTGCTGATCTGTTGGGTATCCAAATTGATGCAGCAATAAATCCTGGAAACAGTGGGGGTCCAGCTTTTAATGATAGTGGAGAGTGCATTGGAATAGCATTTCAGGTTTATAGATCAGCAGATGCTG

Ace file of the UniGene biog3_v1.0_unigene19049

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene25872	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	protease Do-like 2 [Arabidopsis thaliana] sp\|O82261.2\|DEGP2_ARATH RecName: Full=Protease Do-like 2, chloroplastic; Flags: Precursor gb\|AAG41447.1\|AF326865_1 putative DegP2 protease [Arabidopsis thaliana] gb\|AAK14061.1\|AF245171_1 DegP2 protease [Arabidopsi	-	-	73%
FL-Next	sp=Protease Do-like 2, chloroplastic; Arabidopsis thaliana (Mouse-ear cress).	-	-	88%
Blast2go	protease do-like chloroplastic-like	-	-	79%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Acting on peptide bonds (peptide hydrolases), Serine endopeptidases.	EC:3.4.21.-	-	0.0	79%

Source	GOs	Term	Type	Identity
Blast2go	photosystem II repair	GO:0010206	Biological Process	79%
Blast2go	serine-type endopeptidase activity	GO:0004252	Molecular Function	79%
Blast2go	chloroplast stromal thylakoid	GO:0009533	Cellular Component	79%
Blast2go	chloroplast thylakoid membrane	GO:0009535	Cellular Component	79%

Source	InterPros	Term	Type	Identity
Sma3	RNA helicase, ATP-dependent, DEAD-box, conserved site	IPR000629	-	-
Sma3	HMG-I/HMG-Y, DNA-binding, conserved site	IPR000637	-	-
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	Peptidase S1/S6, chymotrypsin/Hap	IPR001254	-	-
Sma3	PDZ domain	IPR001478	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Peptidase S1C, HrtA/DegP2/Q/S	IPR001940	-	-
Sma3	Cytochrome P450, E-class, group I	IPR002401	-	-
Sma3	Peptidase S1B, glutamyl endopeptidase I	IPR008256	-	-
Sma3	Serine endopeptidase DegP2	IPR015724	-	-
Sma3	AT hook, DNA-binding motif	IPR017956	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3		IPR017973	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: O82261

Fln msg: Distance to subject end: 315 aas, your sequence is shorter than subject: 74 - 607

Fln protein: MLTVVVYPLGGDTISVTKGVVSRIEVTSYAHGAADLLGIQIDAAINPGNSGGPAFNDSGECIGIAFQVYRSADA

Protein Length: 75

Fln nts: AATGTTGACTGTTGTAGTTTATCCACTAGGAGGAGATACAATTTCAGTTACTAAGGGTGTAGTTTCACGTATTGAGGTGACATCATATGCACATGGAGCTGCTGATCTGTTGGGTATCCAAATTGATGCAGCAATAAATCCTGGAAACAGTGGGGGTCCAGCTTTTAATGATAGTGGAGAGTGCATTGGAATAGCATTTCAGGTTTATAGATCAGCAGATGCTG

Fln Alignment:

biogeco3_mira_c16250___LTVVVYPLGGDTISVTKGVVSRIEVTSYAHGAADLLGIQIDAAINPGNSGGPAFNDSGECIGIAFQVYRSAD
O82261__________________VTVVGYPLGGDTISVTKGVVSRIEVTSYAHGSSDLLGIQIDAAINPGNSGGPAFNDQGECIGVAFQVYRSEE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain