SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene19045

Length: 235 nt

UniGene Fasta

>biog3_v1.0_unigene19045
AATGTATCTTCTAAATATAACATTGATGAAATAGCTGACCATCAGCCTGTTTCCTCTCAAACTGGCCCTGTGATGGCTCTTCGTTTAACAGTATTTAAGGAAGGCAACACCAATGTGGTAAAAGTGGCTGACTGGATGCCAAGAAATGAAGATTTGGCAGTCATGCCTGTTGGGATTTTGGAATCCTCTCAATGCGAACATACGCTGTCAGCTGTGGATCTGATAATCAGTTTCA

Ace file of the UniGene biog3_v1.0_unigene19045

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene40783	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Vacuolar protein sorting-associated protein, putative n=1 Tax=Ricinus communis RepID=B9RZX0_RICCO	-	-	4.0e-25	64%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	47%
Blast2go	vacuolar protein sorting-associated	-	-	7.3878e-25	81%

Source	GOs	Term	Type	e value	Identity
Blast2go	chloroplast	GO:0009507	Cellular Component	7.3878e-25	81%

Source	InterPros	Term	Type	Identity
Sma3	C2 calcium-dependent membrane targeting	IPR000008	-	-
Sma3	Pleckstrin homology domain	IPR001849	-	-
Sma3	Vacuolar protein sorting-associated protein 62	IPR009291	-	-
Sma3	Vacuolar protein sorting-associated protein	IPR009543	-	-
Sma3	C2 membrane targeting protein	IPR018029	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: F6HE13

Fln msg: Distance to subject end: 581 aas, your sequence is shorter than subject: 78 - 4262

Fln protein: NVSSKYNIDEIADHQPVSSQTGPVMALRLTVFKEGNTNVVKVADWMPRNEDLAVMPVGILESSQCEHTLSAVDLIISF

Protein Length: 79

Fln nts: AATGTATCTTCTAAATATAACATTGATGAAATAGCTGACCATCAGCCTGTTTCCTCTCAAACTGGCCCTGTGATGGCTCTTCGTTTAACAGTATTTAAGGAAGGCAACACCAATGTGGTAAAAGTGGCTGACTGGATGCCAAGAAATGAAGATTTGGCAGTCATGCCTGTTGGGATTTTGGAATCCTCTCAATGCGAACATACGCTGTCAGCTGTGGATCTGATAATCAGTTTCA

Fln Alignment:

biogeco3_mira_c16246___SSKYNIDEIADHQPVSSQTGPVMALRLTVFKEGNTNVVKVADWMPRNEDLAV----MPVGILE---SSQCEHTLSAVD
F6HE13__________________SEKYNIDEIFDHQPIHVSGAPVKALRVTILKEEKMNVIKISDWMPENEPLAITSERLPPSLLQFSTSDQHQESLSTCE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain