SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene19022

Length: 264 nt

UniGene Fasta

>biog3_v1.0_unigene19022
AATGTACAGAAGGTGGTCATTGCAGGGAAGAAAGTTGGGAACAAATTGAATTTAGAGGTGGATATTCTTGGGAAGTATGTGGAGAGATTGCTTAGTGGGTACAGGAATCCTGTGGCCTCAACTGCATAGAGGAAACCTATAGTTCTTTTGAGATTGTGGGGGGCTAATACTTGTACTGGTAGGGTCTGCCTCCTCCCCAAGGTTCGCAGAATTTTGGATTTTCATGGACATGGAATTTGATGGCTCAAATGACCTTTGAAATCA

Ace file of the UniGene biog3_v1.0_unigene19022

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene95	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	putative riboflavin synthase alpha chain [Arabidopsis thaliana]	-	-	60%
FL-Next	tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss).	-	-	75%
Blast2go	riboflavin synthase alpha chain	-	-	77%

Source	ECs	Term	Type	e value	Identity
Blast2go	Riboflavin synthase.	EC:2.5.1.9	-	0.0	77%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Riboflavin metabolism	00740		0.0	77%
Blast2go	Metabolic pathways	01100		0.0	77%

Source	GOs	Term	Type	Identity
Blast2go	riboflavin biosynthetic process	GO:0009231	Biological Process	77%
Blast2go	binding	GO:0005488	Molecular Function	77%
Blast2go	riboflavin synthase activity	GO:0004746	Molecular Function	77%
Blast2go	chloroplast	GO:0009507	Cellular Component	77%

Source	InterPros	Term	Type	e value	Identity
Sma3	Lumazine-binding protein	IPR001783	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: D8RNE6

Fln msg: your sequence is shorter than subject: 43 - 206

Fln protein: NVQKVVIAGKKVGNKLNLEVDILGKYVERLLSGYRNPVASTA*

Protein Length: 44

Fln nts: AATGTACAGAAGGTGGTCATTGCAGGGAAGAAAGTTGGGAACAAATTGAATTTAGAGGTGGATATTCTTGGGAAGTATGTGGAGAGATTGCTTAGTGGGTACAGGAATCCTGTGGCCTCAACTGCATAG___AGGAAACCTATAGTTCTTTTGAGATTGTGGGGGGCTAATACTTGTACTGGTAGGGTCTGCCTCCTCCCCAAGGTTCGCAGAATTTTGGATTTTCATGGACATGGAATTTGATGGCTCAAATGACCTTTGAAATCA

Fln Alignment:

biogeco3_mira_c16217___QKVVIAGKKVGNKLNLEVDILGKYVERLLSGYRNPVA
D8RNE6__________________QKVVIPGKAVGNRVNLEVDILGKYVERMLQGYAVPAA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain