SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene19006

Length: 324 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene19006
GGAATAGGAGTGCTTCTAATCAGTCTGTGAGGAGGGATGCCGTGAGGGAGATTAAGGCGCTGGCGAAGGAAAATCGCGAGACGCGTCTGCGTATTGTGGAAGCTGGGGCCGTGGCGAAGATTTTGCCTCTCTTGTCCTGTGGGGACTCTCAGACCGAAGAAAATGCCATGGCAGCGCTCTTCTACTAAAGCTTGGATGATGATAATAAAGTGGGGCTTGTGGCAGAAGGGGCTGTGGATTCGATCGTCAATGTGTTGAAGCACGGTTCCATGGAGAATCGATCCACGGCGGCCGTGACCTTGACGAGCTTGGCGATGGTACATT

Ace file of the UniGene biog3_v1.0_unigene19006 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2544	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RecName: Full=Protein spotted leaf 11; AltName: Full=Cell death-related protein SPL11 sp\|Q0IMG9.2\|SL11_ORYSJ RecName: Full=E3 ubiquitin-protein ligase SPL11; AltName: Full=Cell death-related protein SPL11; AltName: Full=Protein spotted leaf 11 gb\|AAT94160	-	-	1.99965e-42	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	47%
Blast2go	ubiquitin-protein pub12	-	-	0.0	67%

Source	GOs	Term	Type	e value	Identity
Blast2go	binding	GO:0005488	Molecular Function	0.0	67%

Source	InterPros	Term	Type	Identity
Sma3	Armadillo	IPR000225	-	-
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	Beta-lactamase, class-A/D	IPR000871	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	U box domain	IPR003613	-	-
Sma3	Armadillo-like helical	IPR011989	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PSB5

Fln msg: Distance to subject end: 168 aas, your sequence is shorter than subject: 107 - 497

Fln protein: NRSASNQSVRRDAVREIKALAKENRETRLRIVEAGAVAKILPLLSCGDSQTEENAMAALFY*SLDDDNKVGLVAEGAVDSIVNVLKHGSMENRSTAAVTLTSLAMVH

Protein Length: 108

Fln nts: GGAATAGGAGTGCTTCTAATCAGTCTGTGAGGAGGGATGCCGTGAGGGAGATTAAGGCGCTGGCGAAGGAAAATCGCGAGACGCGTCTGCGTATTGTGGAAGCTGGGGCCGTGGCGAAGATTTTGCCTCTCTTGTCCTGTGGGGACTCTCAGACCGAAGAAAATGCCATGGCAGCGCTCTTCTACTAAAGCTTGGATGATGATAATAAAGTGGGGCTTGTGGCAGAAGGGGCTGTGGATTCGATCGTCAATGTGTTGAAGCACGGTTCCATGGAGAATCGATCCACGGCGGCCGTGACCTTGACGAGCTTGGCGATGGTACATT

Fln Alignment:

biogeco3_mira_c16192___VRRDAVREIKALAKENRETRLRIVEAGAVAKILPLLSCGDSQTEENAMAALFY*SLDDDNKVGLVAEGAVDSIVNVLKHGSMENRSTAAVTLTSLAMV
C0PSB5__________________VQRAAAEEIRLLAKRNADNRLLIAEAGAIPQLVKLLSSTDMKTQEHAVTALLNLSIHSSNKGFIVQAGAINRIIDVLKHGSTEARENAAATLFSLSVV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain