SustainPineDB

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Assembly info
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene18985

Length: 203 nt

UniGene Fasta

>biog3_v1.0_unigene18985
AATGTCAGCGAAATGGGTGCACATTTTTCACCTTGTGGACGTTTCTTGGCTGCATGTGTGGCATGTGTGCTTCCCCAGCAGGAACTAGAAGCAGGCATGCAGTCCCAGCCAATTCAAGGTGCTACGGGATAGCGACATCTCCAACAAGACATCCAATATCTGCGCAGCAAGTTGTCTATGAGCTTCGTATCTACTCACTCGAG

Ace file of the UniGene biog3_v1.0_unigene18985

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8592	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Nucleotide binding protein, putative n=1 Tax=Ricinus communis RepID=B9T5V8_RICCO	-	-	49%
FL-Next	tr=Nucleotide binding protein, putative; Ricinus communis (Castor bean).	-	-	65%
Blast2go	protein	-	-	65%

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9RWS8

Fln msg: Overlapping hits, possible frame ERROR between 129 and 126, Distance to subject end: 66 aas, your sequence is shorter than subject: 68 - 690

Fln protein: NVSEMGAHFSPCGRFLAACVACVLPQQELEAGMQSQPIQGAxxxATSPTRHPISAQQVVYELRIYSLE

Protein Length: 69

Fln nts: AATGTCAGCGAAATGGGTGCACATTTTTCACCTTGTGGACGTTTCTTGGCTGCATGTGTGGCATGTGTGCTTCCCCAGCAGGAACTAGAAGCAGGCATGCAGTCCCAGCCAATTCAAGGTGCTxxxxxxxxxGCGACATCTCCAACAAGACATCCAATATCTGCGCAGCAAGTTGTCTATGAGCTTCGTATCTACTCACTCGAG

Fln Alignment:

biogeco3_mira_c16168___SEMGAHFSPCGRFLAACVACVLPQQELEAGMQSQPIQGATxIATSPTRHPISAQQVVYELRIYSLE
B9RWS8__________________SEMGAHFSPCGRFLAACIACVLPHLEADPGLQGQVLHHNAxAATSPTRHPISAHQVMYELRIYSLE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain