SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene18979

Length: 201 nt

UniGene Fasta

>biog3_v1.0_unigene18979
AATGTCAATATATGAGCCTATCCTCATCAATCCTCAAATATGCTGATATCAAGGCTCGTTTGCAGGGGAGCAAAAATGATGAAGATATTACACCATTTACAGCTGTGGACAAGTTGCTTGGTTATGAGGGAGGCAGGCTAAGGATGGATGAAAGATGGAATTATGCATGAGCGATCCTGACCTTGTTCCTCTTCTTATTCA

Ace file of the UniGene biog3_v1.0_unigene18979

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1311	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Replication factor C large subunit (Fragment) n=2 Tax=Poaceae RepID=Q8L6A5_9POAL	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	replication factor c subunit 1-like	-	-	78%

Source	GOs	Term	Type	Identity
Blast2go	response to DNA damage stimulus	GO:0006974	Biological Process	78%
Blast2go	regulation of chromatin silencing	GO:0031935	Biological Process	78%
Blast2go	regulation of histone H3-K9 methylation	GO:0051570	Biological Process	78%
Blast2go	response to abscisic acid stimulus	GO:0009737	Biological Process	78%
Blast2go	DNA replication	GO:0006260	Biological Process	78%
Blast2go	DNA clamp loader activity	GO:0003689	Molecular Function	78%
Blast2go	ATP binding	GO:0005524	Molecular Function	78%
Blast2go	DNA replication factor C complex	GO:0005663	Cellular Component	78%

Source	InterPros	Term	Type	Identity
Sma3	BRCT domain	IPR001357	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	ATPase, AAA-3	IPR011703	-	-
Sma3	DNA replication factor C, large subunit	IPR012178	-	-
Sma3	DNA replication factor RFC1, C-terminal	IPR013725	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NXU4

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 245 aas, your sequence is shorter than subject: 56 - 550

Fln protein: CQYMSLSSSILKYADIKARLQGSKNDEDITPFTAVDKLLGYEGGRLRMDERWNYA*

Protein Length: 57

Fln nts: AATGTCAATATATGAGCCTATCCTCATCAATCCTCAAATATGCTGATATCAAGGCTCGTTTGCAGGGGAGCAAAAATGATGAAGATATTACACCATTTACAGCTGTGGACAAGTTGCTTGGTTATGAGGGAGGCAGGCTAAGGATGGATGAAAGATGGAATTATGCATGAGCGATCCTGACCTTGTTCCTCTTCTTATTCA

Fln Alignment:

biogeco3_mira_c16155___QYMSLSSSILKYADIKARLQGSKNDEDITPFTAVDKLLGYEGGRLRMDER
A9NXU4__________________QYMSLSSSILKYADIKARLQGSKKDEDITPFTAVDKLLGYEGGRLRMDER

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain