SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene18952

Length: 246 nt

UniGene Fasta

>biog3_v1.0_unigene18952
AATGTATAGATGCCATTCATGTCTTAATCCAATTGGAAAGATCCGTTGTCTGGCCATGGAAAATTGATCGAGTCCATGTGTAGCTTGCATATATGCTGATAGTGGATGTAGAGAGTTAGTTAGATATTCCCACATAACTGCACACCAGTCCAAATGTATATATGCACCATACTTGTGTTCTGTGTCAGGATGCAGCTTTTTTGGTCCATCAACACGGTTTTCTGACCATTTCATCTCTGCACATGG

Ace file of the UniGene biog3_v1.0_unigene18952

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene941	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ubiquitin; TRAF-like [Medicago truncatula]	-	-	4.0e-38	38%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	80%
Blast2go	ubiquitin	-	-	0.0	58%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ubiquitin--protein ligase.	EC:6.3.2.19	-	0.0	58%

Source	GOs	Term	Type	Identity
Blast2go	multicellular organismal development	GO:0007275	Biological Process	58%
Blast2go	protein ubiquitination	GO:0016567	Biological Process	58%
Blast2go	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	58%
Blast2go	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	58%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	58%
Blast2go	nucleus	GO:0005634	Cellular Component	58%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Seven-in-absentia protein, sina	IPR004162	-	-
Sma3	Zinc finger, SIAH-type	IPR013010	-	-
Sma3	Seven In Absentia Homolog-type	IPR013323	-	-
Sma3	Zinc finger, C2H2-like	IPR015880	-	-
Sma3	Seven-in-absentia protein, TRAF-like domain	IPR018121	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AEC6

Fln msg: Distance to subject end: 115 aas, your sequence is shorter than subject: 81 - 261

Fln protein: MYRCHSCLNPIGKIRCLAMEN*SSPCVACIYADSGCRELVRYSHITAHQSKCIYAPYLCSVSGCSFFGPSTRFSDHFISAH

Protein Length: 82

Fln nts: AATGTATAGATGCCATTCATGTCTTAATCCAATTGGAAAGATCCGTTGTCTGGCCATGGAAAATTGATCGAGTCCATGTGTAGCTTGCATATATGCTGATAGTGGATGTAGAGAGTTAGTTAGATATTCCCACATAACTGCACACCAGTCCAAATGTATATATGCACCATACTTGTGTTCTGTGTCAGGATGCAGCTTTTTTGGTCCATCAACACGGTTTTCTGACCATTTCATCTCTGCACATGG

Fln Alignment:

biogeco3_mira_c16115___RCHSCLNPIGKIRCLAMEN*-SSPCVACIYADSGCRELVRYSHITAHQSKCIYAPYLCSVSGCSFFGPSTRFSDHFISAH
D5AEC6__________________RCHSCLNPIGKIRCLAIEKLIESMKVGCIYAHHGCRELVRYSQITAHQSKCIYAPYSCSVSGCSFSGPSIRFSDHFTSVH

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain