SustainPineDB

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Assembly info
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene18916

Length: 364 nt

UniGene Fasta

>biog3_v1.0_unigene18916
AATGTCAATTTAAGAAAAGTAGAAGCAGAAGAAGCCTATACAGGTCTAGTAGAGAAGACTGGCGTGAGAAGGCTTGGGAAAGGAAAAGAGATCAAGCTGTATCAGAGGAATTGTCTTGCGATAACAATTATTTCAGCGATTTTCAGTCCTCTAAGACAGCTTCTGACTCAGCCAGCGAAGAGGCTAGAGCTGATTCTCCTTATTCAACTTTGAGACGTACTTCTAGTACTCCCAGAGTTAGAAAGCTTACAAACGTGGACTTAGATGAGTTGAAAGGGTGTCTAGATCTGGGATTTGGTTTCAACTATGAAGAAATGCCCGAGCTCTCAAATACCTTGCCAGCCTTGGAGTTATGTTATACATT

Ace file of the UniGene biog3_v1.0_unigene18916

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3571	3/3

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF1685 domain containing protein	-	-	3.0e-21	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	92%
Blast2go	uncharacterized protein	-	-	0.0	75%

Source	GOs	Term	Type	e value	Identity
Blast2go	plastid	GO:0009536	Cellular Component	0.0	75%

Source	InterPros	Term	Type	e value	Identity
Sma3	Protein of unknown function DUF1685	IPR012881	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LL54

Fln msg: Distance to subject end: 68 aas, your sequence is shorter than subject: 120 - 353

Fln protein: CQFKKSRSRRSLYRSSREDWREKAWERKRDQAVSEELSCDNNYFSDFQSSKTASDSASEEARADSPYSTLRRTSSTPRVRKLTNVDLDELKGCLDLGFGFNYEEMPELSNTLPALELCYT

Protein Length: 121

Fln nts: AATGTCAATTTAAGAAAAGTAGAAGCAGAAGAAGCCTATACAGGTCTAGTAGAGAAGACTGGCGTGAGAAGGCTTGGGAAAGGAAAAGAGATCAAGCTGTATCAGAGGAATTGTCTTGCGATAACAATTATTTCAGCGATTTTCAGTCCTCTAAGACAGCTTCTGACTCAGCCAGCGAAGAGGCTAGAGCTGATTCTCCTTATTCAACTTTGAGACGTACTTCTAGTACTCCCAGAGTTAGAAAGCTTACAAACGTGGACTTAGATGAGTTGAAAGGGTGTCTAGATCTGGGATTTGGTTTCAACTATGAAGAAATGCCCGAGCTCTCAAATACCTTGCCAGCCTTGGAGTTATGTTATACATT

Fln Alignment:

biogeco3_mira_c16056___QFKKXXXXXXXXXXXXEDWREKAWERKRDQAVSEELSCDNNYFSDFQSSKTXXXXXXXXXXXXXPYSTLRRTSSTPRVRKLTNVDLDELKGCLDLGFGFNYEEMPELSNTLPALELCY
B8LL54__________________QSKKTRSRRSLYRAIREDWREKAWERKRDQALSEEFSCDYNYFSDFQSSKTASDSASEEARADSPYSTLRRTTSTPRVRKFTNVDLDELKGCLDLGFGFNYEEMPELSNTLPALELCY

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain