SustainPineDB

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Assembly info
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene18901

Length: 240 nt

UniGene Fasta

>biog3_v1.0_unigene18901
TGTTAATGATATGATACGAGATGAGGATCTCATGGTGCATAAATTGCCTTCCCATGGAAATGGAGCACAGCATAAATACTGTGCAGCTCAATCTGGCACCCAGCATATTCAGAAACTTGTCACAAATATGGTTCCAGGATATTTTCCTAGGAAATTAAGTGCAAGGGAACGTAATTTGTTGAAACGCAAAGCCAAGGTCAATGTTAACCACTCAAAAGGTTGGTGTGATGATGATACATT

Ace file of the UniGene biog3_v1.0_unigene18901

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene25415	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Chromatin remodeling complex subunit n=1 Tax=Populus trichocarpa RepID=B9I6D4_POPTR	-	-	50%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	55%
Blast2go	tata-binding protein-associated factor 172-like	-	-	67%

Source	InterPros	Term	Type	Identity
Sma3	SNF2-related	IPR000330	-	-
Sma3	HEAT	IPR000357	-	-
Sma3	Signal recognition particle, SRP54 subunit, GTPase	IPR000897	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3		IPR014021	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: F6I5H6

Fln msg: Distance to subject end: 1796 aas, your sequence is shorter than subject: 79 - 2022

Fln protein: VNDMIRDEDLMVHKLPSHGNGAQHKYCAAQSGTQHIQKLVTNMVPGYFPRKLSARERNLLKRKAKVNVNHSKGWCDDDT

Protein Length: 80

Fln nts: TGTTAATGATATGATACGAGATGAGGATCTCATGGTGCATAAATTGCCTTCCCATGGAAATGGAGCACAGCATAAATACTGTGCAGCTCAATCTGGCACCCAGCATATTCAGAAACTTGTCACAAATATGGTTCCAGGATATTTTCCTAGGAAATTAAGTGCAAGGGAACGTAATTTGTTGAAACGCAAAGCCAAGGTCAATGTTAACCACTCAAAAGGTTGGTGTGATGATGATACATT

Fln Alignment:

biogeco3_mira_c16030___VNDMIRDEDLMVHKLPSHGNGAQHKYCAAQSGTQHIQKLVTNMVPGYFPRKLSARERNLLKRKAKVN-VNHSKGWCDD
F6I5H6__________________VNDMIRDEDLIVHKFNPQGNGIDNRFNNSQS-VHSIQRLVANMVPTIISKRPSARELNLLKRKAKINSKDQTKGWSED

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain