SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene18834

Length: 243 nt

UniGene Fasta

>biog3_v1.0_unigene18834
CCTTTGTTGGGGCAAATAACTCTTCTTTGGTACCTGCAGCGAAAACCTATGTTGAGATTCGAGGTTATGCATGGCCAGCCGTACTAATTACTATGGTTGCTCAAAGTGCCAGCTTGGGTATGCAAGATTCATGGAGCCCGTTAAAAGTTCTGGGAATACAAAGTCTTATAAACTTGGTAACAACTATCCTACTATGTGCATATTTTCGGCTTGGGATTGCAGGAGCAGCATTTGCAACAGCAA

Ace file of the UniGene biog3_v1.0_unigene18834

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene559	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	MATE efflux family protein [Arabidopsis thaliana] sp\|Q8W4G3.1\|MATE4_ARATH RecName: Full=MATE efflux family protein 4, chloroplastic; AltName: Full=Protein DTX46; Flags: Precursor gb\|AAL32655.1\| Unknown protein [Arabidopsis thaliana] gb\|AAM91197.1\| unknown	-	-	53%
FL-Next	sp=MATE efflux family protein 4, chloroplastic; Arabidopsis thaliana (Mouse-ear cress).	-	-	62%
Blast2go	protein	-	-	72%

Source	GOs	Term	Type	Identity
Blast2go	transmembrane transport	GO:0055085	Biological Process	72%
Blast2go	transmembrane transporter activity	GO:0022857	Molecular Function	72%
Blast2go	membrane	GO:0016020	Cellular Component	72%

Source	InterPros	Term	Type	e value	Identity
Sma3	Multi antimicrobial extrusion protein	IPR002528	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q8W4G3

Fln msg: Distance to subject end: 255 aas, your sequence is shorter than subject: 80 - 559

Fln protein: FVGANNSSLVPAAKTYVEIRGYAWPAVLITMVAQSASLGMQDSWSPLKVLGIQSLINLVTTILLCAYFRLGIAGAAFATA

Protein Length: 81

Fln nts: CCTTTGTTGGGGCAAATAACTCTTCTTTGGTACCTGCAGCGAAAACCTATGTTGAGATTCGAGGTTATGCATGGCCAGCCGTACTAATTACTATGGTTGCTCAAAGTGCCAGCTTGGGTATGCAAGATTCATGGAGCCCGTTAAAAGTTCTGGGAATACAAAGTCTTATAAACTTGGTAACAACTATCCTACTATGTGCATATTTTCGGCTTGGGATTGCAGGAGCAGCATTTGCAACAGCAA

Fln Alignment:

biogeco3_mira_c15941___FVGANNSSLVPAAKTYVEIRGYAWPAVLITMVAQSASLGMQDSWSPLKVLGIQSLINLVTTILLCAYFRLGIAGAAFAT
Q8W4G3__________________FTGVKNADIVPAANKYVQIRGLAWPAVLIGWVAQSASLGMKDSWGPLKALAVASAINGVGDVVLCTFLGYGIAGAAWAT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain