SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene18814

Length: 239 nt

UniGene Fasta

>biog3_v1.0_unigene18814
AATGTCGGGCTATCCCACTCGGATGTCTCACCATGTGTTTGCAAAACGGTATGGGTTCCTCTTGCCAGGAAACAATGTTGGCCAAGATGCACTTAGTGTTTCAGTGGCAATCCTTCACCAATTTAATATCCTGCCTGAGATGTACCAAGTTGGTTTCACAAAGTTGTTTTTCCGAACAGGACAGATTGCCAAACTGGAAGATACTTGTGTTCGAACTCTTCGTGGAATTCTTGGAGTCC

Ace file of the UniGene biog3_v1.0_unigene18814

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene14698	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Myosin vIII, putative n=1 Tax=Ricinus communis RepID=B9SCN9_RICCO	-	-	9.94922e-44	57%
FL-Next	tr=Myosin head family protein, expressed; Oryza sativa subsp. japonica (Rice).	-	-	0.0	78%
Blast2go	myosin-like protein	-	-	2.63444e-43	70%

Source	GOs	Term	Type	e value	Identity
Blast2go	positive regulation of catalytic activity	GO:0043085	Biological Process	2.63444e-43	70%
Blast2go	cellular iron ion homeostasis	GO:0006879	Biological Process	2.63444e-43	70%
Blast2go	positive regulation of programmed cell death	GO:0043068	Biological Process	2.63444e-43	70%
Blast2go	response to cold	GO:0009409	Biological Process	2.63444e-43	70%
Blast2go	positive regulation of transcription, DNA-dependent	GO:0045893	Biological Process	2.63444e-43	70%
Blast2go	positive regulation of abscisic acid mediated signaling pathway	GO:0009789	Biological Process	2.63444e-43	70%
Blast2go	response to oxidative stress	GO:0006979	Biological Process	2.63444e-43	70%
Blast2go	enzyme activator activity	GO:0008047	Molecular Function	2.63444e-43	70%
Blast2go	apoplast	GO:0048046	Cellular Component	2.63444e-43	70%
Blast2go	stromule	GO:0010319	Cellular Component	2.63444e-43	70%
Blast2go	phragmoplast	GO:0009524	Cellular Component	2.63444e-43	70%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	2.63444e-43	70%
Blast2go	chloroplast thylakoid	GO:0009534	Cellular Component	2.63444e-43	70%
Blast2go	cell plate	GO:0009504	Cellular Component	2.63444e-43	70%
Blast2go	plasma membrane	GO:0005886	Cellular Component	2.63444e-43	70%
Blast2go	mitochondrion	GO:0005739	Cellular Component	2.63444e-43	70%

Source	InterPros	Term	Type	Identity
Sma3	IQ motif, EF-hand binding site	IPR000048	-	-
Sma3	Myosin head, motor domain	IPR001609	-	-
Sma3	Myosin, N-terminal, SH3-like	IPR004009	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: Q337J0

Fln msg: Distance to subject end: 320 aas, your sequence is shorter than subject: 79 - 995

Fln protein: MSGYPTRMSHHVFAKRYGFLLPGNNVGQDALSVSVAILHQFNILPEMYQVGFTKLFFRTGQIAKLEDTCVRTLRGILGV

Protein Length: 80

Fln nts: AATGTCGGGCTATCCCACTCGGATGTCTCACCATGTGTTTGCAAAACGGTATGGGTTCCTCTTGCCAGGAAACAATGTTGGCCAAGATGCACTTAGTGTTTCAGTGGCAATCCTTCACCAATTTAATATCCTGCCTGAGATGTACCAAGTTGGTTTCACAAAGTTGTTTTTCCGAACAGGACAGATTGCCAAACTGGAAGATACTTGTGTTCGAACTCTTCGTGGAATTCTTGGAGTCC

Fln Alignment:

biogeco3_mira_c15916___SGYPTRMSHHVFAKRYGFLLPGNNVGQDALSVSVAILHQFNILPEMYQVGFTKLFFRTGQIAKLEDTCVRTLRGILGV
Q337J0__________________SGYPTRMTHQKFARRYGFLLLEDVASQDPLSVSVAILHQFNILPEMYQVGYTKLFFRTGQIGKLEDTRNRTLHGILRV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain