SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene18807

Length: 279 nt

UniGene Fasta

>biog3_v1.0_unigene18807
AATGTAGGAGAGGAACTGGAAGTTATAACGGTTCTGACGTTATGGAATCGGGACTTGATAGAAGTGGGTCCTATTCTAGATCAGAACCAAAAGATTCTGGGCCGAATCCTCTTAGAGTGGTGATCCATAGACACCATCCCAACAAACAAAATCTGCCTTTCATAGAGCCAGGGAAGTTAGTTGGTCTTCCAGGATCAGTGGAAGAGCTTCTTAGAGTAGCAGGGATGAAGTTGGGTTGCCATCCCATTAAAGTTTCAGCCAAGATGGCATTGAGACATT

Ace file of the UniGene biog3_v1.0_unigene18807

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene13612	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Potassium channel AKT6 n=1 Tax=Arabidopsis thaliana RepID=AKT6_ARATH	-	-	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	47%
Blast2go	potassium channel	-	-	66%

Source	GOs	Term	Type	Identity
Blast2go	transport	GO:0006810	Biological Process	66%
Blast2go	pollen tube growth	GO:0009860	Biological Process	66%
Blast2go	inward rectifier potassium channel activity	GO:0005242	Molecular Function	66%

Source	InterPros	Term	Type	Identity
Sma3	Cyclic nucleotide-binding domain	IPR000595	-	-
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Ankyrin repeat	IPR002110	-	-
Sma3	Potassium channel, voltage-dependent, EAG/ELK/ERG	IPR003938	-	-
Sma3	Ion transport	IPR005821	-	-
Sma3	Ion transport 2	IPR013099	-	-
Sma3	RmlC-like jelly roll fold	IPR014710	-	-
Sma3	Cyclic nucleotide-binding, conserved site	IPR018488	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LPV4

Fln msg: Distance to subject end: 27 aas, your sequence is shorter than subject: 92 - 659

Fln protein: CRRGTGSYNGSDVMESGLDRSGSYSRSEPKDSGPNPLRVVIHRHHPNKQNLPFIEPGKLVGLPGSVEELLRVAGMKLGCHPIKVSAKMALRH

Protein Length: 93

Fln nts: AATGTAGGAGAGGAACTGGAAGTTATAACGGTTCTGACGTTATGGAATCGGGACTTGATAGAAGTGGGTCCTATTCTAGATCAGAACCAAAAGATTCTGGGCCGAATCCTCTTAGAGTGGTGATCCATAGACACCATCCCAACAAACAAAATCTGCCTTTCATAGAGCCAGGGAAGTTAGTTGGTCTTCCAGGATCAGTGGAAGAGCTTCTTAGAGTAGCAGGGATGAAGTTGGGTTGCCATCCCATTAAAGTTTCAGCCAAGATGGCATTGAGACATT

Fln Alignment:

biogeco3_mira_c15906___SYSRSEPKD-SGPNPLRVVIHRHHPNKQNLPFIEPGKLVGLPGSVEELLRVAGMKLGCHPIKV
B8LPV4__________________SRSNLQPRSISEAPPLRVIIYKNHPSK-NKQYTGLGKLVILPDTVDQLLKMAGLKFGFHPVKV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain