SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene18790

Length: 476 nt

UniGene Fasta

>biog3_v1.0_unigene18790
GTGAACTGTCTTAGGGATAGTGTACTTGCTTTCTCACATAATGTGCCTGGGACAACTGCAAGGGAGGTGATGGAAATGGTCTTAGCGGCGCAATATGACCCAATGAAAGAGATAGGAGCATCTTCAAAGTCATCAGCAGGATTCATCCCCCATGGACCTGGTGCAGTTCGTGATATTGCTGAGGATATCAGAAATGAATTACCTCAGGCGCAGGCCCATTAAACAATAAACATTATAAATACTAAAAGTACATATGAAGTGTCAAATTTCAGAATATAAGCACAATGTGTACAACGATGTTTATAGCTTACCGTCAAATTTCAGAATATAAGCACATTGTGTACAACGATGTTTATAGCTTACCGTTTGCATTTTGAGTTTTCTTATTTTTGATACAAGGAATTCTTACAAATTTGCTGGTATTGGTTTATAGCAAGTGTAAGGTGCCTACTTACTATATAGTAAGTAGACACATT

Ace file of the UniGene biog3_v1.0_unigene18790

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene25629	7/7

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Band_7 domain containing protein	-	-	1.0e-28	29%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	79%
Blast2go	hypersensitive-induced response protein	-	-	0.0	88%

Source	GOs	Term	Type	Identity
Blast2go	protein histidine kinase binding	GO:0043424	Molecular Function	88%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	88%
Blast2go	plasma membrane	GO:0005886	Cellular Component	88%

Source	InterPros	Term	Type	e value	Identity
Sma3	Band 7 protein	IPR001107	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NL10

Fln msg: your sequence is shorter than subject: 74 - 284

Fln protein: VNCLRDSVLAFSHNVPGTTAREVMEMVLAAQYDPMKEIGASSKSSAGFIPHGPGAVRDIAEDIRNELPQAQAH*

Protein Length: 75

Fln nts: GTGAACTGTCTTAGGGATAGTGTACTTGCTTTCTCACATAATGTGCCTGGGACAACTGCAAGGGAGGTGATGGAAATGGTCTTAGCGGCGCAATATGACCCAATGAAAGAGATAGGAGCATCTTCAAAGTCATCAGCAGGATTCATCCCCCATGGACCTGGTGCAGTTCGTGATATTGCTGAGGATATCAGAAATGAATTACCTCAGGCGCAGGCCCATTAA___ACAATAAACATTATAAATACTAAAAGTACATATGAAGTGTCAAATTTCAGAATATAAGCACAATGTGTACAACGATGTTTATAGCTTACCGTCAAATTTCAGAATATAAGCACATTGTGTACAACGATGTTTATAGCTTACCGTTTGCATTTTGAGTTTTCTTATTTTTGATACAAGGAATTCTTACAAATTTGCTGGTATTGGTTTATAGCAAGTGTAAGGTGCCTACTTACTATATAGTAAGTAGACACATT

Fln Alignment:

biogeco3_mira_c15878___VNCLRDSVLAFSHNVPGTTAREVMEMVLAAQY-DPMKEIGASSKSSAGFIPHGPGAVRDIAEDIRNELPQAQAH
A9NL10__________________VDGLRDSVIAFSDNVPGTTAREVMDMVLVTQYFDTMKEIGASSKSSAVFIPHGPGAVSDVAEQIRNGLLQAQAH

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
314	25	75			0.996473
315			75	25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain