SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene18787

Length: 2870 nt

UniGene Fasta

>biog3_v1.0_unigene18787
TCTAGAGTACGCGGGAAGCTTTTCTATTTCTCATTATCGTTACGAAGAGCAACCAGCTGCAAAGAGTACAAACGAATTGCAGCTAGACACAGGTGCTCATTGGTATTCAAGAGTAAGGCAAAATGGTGAAGTTCACGGCTGAAGAGCTTCGTAAAATCATGGACAGGAAGCATAACATACGAAACATGTCTGTTATTGCCCATGTTGATCACGGAAAATCCACTCTCACTGATTCTTTGGTAGCAGCAGCTGGTATCATTGCTCAAGAAGTTGCTGGAGATGTCAGAATGACTGATACTCGGGCAGATGAAGCTGAACGTGGCATCACCATCAAGTCAACTGGAATTTCGTTGTACTATGTGATGGAGGATTCAGCGGTGAAAAATTTCAAGGGGGATAGAGAAGGACACGAATATTTGATAAATCTGATTGATTCTCCAGGGCATGTTGACTTTTCTTCAGAAGTTACAGCAGCCCTGCGAATCACAGATGGTGCACTGGTTGTGGTAGATTGTATTGAAGGGGTTTGTGTCCAGACTGAGACTGTTCTTCGTCAAGCTCTTGGAGAAAGGATTAGGCCTGTTCTCACTGTGAACAAGATGGACAGGTGCTTTCTTGAGTTGCAGGTTGATGGAGAGGAAGCTTACCAAACCTTCTCACGTGTCATTGAAAATGCAAATGTGATTATGGCTACTTATGAAGATCCTCTTCTTGGTGACTGCCAAGTTTATCCTGAAAAAGGTACAGTTGCATTCTCGGCAGGTCTGCACGGGTGGGCATTTACCCTCACAAATTTTGCAAAAATGTATGCTTCAAAGTTTGGAGTGGATGAAGCAAAGATGATGGAGAGGCTCTGGGGTGAGAACTTTTTTGATCCAGCTACAAAGAAATGGACAACCAAGAATACAGGTTCTGCAACTTGCAAAAGAGGATTTGTTCAATTCATATATGAACCTATTAAGCAAATTATCAATATTTGTATGAATGATCAAAAGGATAAGTTGTGGCCCATGTTGCAGAAATTGGGAGTTGTAATGAAAAGTGACGAGAAGGAGCTGGTTGCAAAAGCACTCATGAAGCGTGTCATGCAAACCTGGCTACCTGCAAGTAGTGCTTTACTTGAAATGATGATTTTCCATCTTCCTTCTCCAGCGAAGGCACAGAGATATCGTGTGGAAAACTTGTATGAAGGACCTCTTGATGATGTATATGCAACTGCAATAAGAAACTGTGACCCTGAGGGTCCACTGATGTTGTATGTTTCAAAAATGATTCCAGCTTCGGACAAAGGACGTTTCTTTGCCTTTGGTCGTGTTTTTGCTGGCAGAGTTGCAACAGGTATGAAGGTAAGGATCATGGGTCCCAACTATGTGCCAGGTCAGAAGAAAGATTTATATACAAAGAGTGTTCAAAGGACTGTGATATGGATGGGAAAGAGACAAGAATCTGTTGAGGATGTGCCTTGTGGAAATACAGTGGCTTTGGTTGGGTTAGACCAGTTCATAACCAAAAATGCTACACTGACAAACGAGAAGGAGGCTGATGCTCATCCGATCAGAGCAATGAAGTTCTCTGTGTCCCCTGTTGTACGTGTTGCTGTGCAGTGCAAGGTGGCATCTGACCTTCCAAAACTTGTTGAAGGGCTGAAGCGTCTTGCTAAGTCGGATCCTATGGTTGTTTGTACAATTGAGGAATCTGGAGAACATATTATTGCAGGTGCAGGAGAGCTTCATCTCGAGATTTGCTTAAAAGATCTCCAAGATGATTTTATGGGTGGAGCTGAGATTGTTGTTTCTGATCCTGTTGTCTCATTTAGAGAAACTGTTTTGGAGAAATCATGCCGTACTGTTATGAGCAAGTCTCCAAATAAACATAACAGGCTTTACTTTGAAGCAAGACCTTTAGAAGAAGGTCTTGCAGAAGCAATTGATGATGGTCGCATTGGCCCAAAGGATGATCCAAAGGCTCGCGCAAAAATCCTTTCTGAGGAATTTGGATGGGACAAAGATTTGGCTAAGAAGATCTGGTGTTTTGGACCTGAAACCACTGGTCCCAATATGGTGGTGGATATGTGTAAGGGAGTTCAATACTTGAATGAAATTAAAGATTCTGTGGTTGCTGCATTCCAATGGGCATCTAAGGAAGGTGCTCTTGCAGAAGAAAATATGCGTGGTATTTGCTTTGAGGTTTGTGACGTGGTTTTGCACACTGATGCTATCCATAGAGGAGGTGGCCAGGTTATCCCAACGGCCAGAAGGGTTATGTATGCATCTCAGCTTACTGCCAAACCACGGCTTCTTGAGCCAGTATATCTCGTTGAGATTCAGGCTCCTGAGAATGCCCTTGGTGGTATTTATGGTGTGCTGAACCAGAAGAGAGGTCATGTTTTTGAAGAAATGCAGAGGCCAGGTACTCCACTATACAACATCAAGGCATATCTGCCAGTTGTTGAATCATTCGGATTCTCAAGCACTCTCCGTGCTGCAACTTCTGGCCAGGCTTTCCCTCAATGTGTGTTTGACCACTGGGATATGATGGGCTCTGATCCATTGGAACCTGGTTCCCAAGCTGGGCAGCTTGTGACTGATATCCGTAAGAGGAAGGGTCTTAAGGAGAGTATGACTCCCTTGTCAGAGTTCGAAGACAAGCTGTAGAGCTTTGCTATGTTTGCATGTCGGATGCTGTCAAGATTGAGGAACCTCCGAGTATTAAAACACAGTTTTGTGTGCTAGGACTAGTTGAATTTATGCTATTCAGGTATTTTTGTGATCTGTTATTTATGTTATTCAGGTATTTTTGTGATTTGAAAATACTTTTTACAAGGTACATCCATTAATACTTTTAAATGTTACACATTCTCCCTTGACATT

Ace file of the UniGene biog3_v1.0_unigene18787

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2054	83/455
SustainPine v2.0	sp_v2.0_unigene19640	7/455
SustainPine v2.0	sp_v2.0_unigene21540	361/455
SustainPine v2.0	sp_v2.0_unigene60772	1/455
SustainPine v2.0	sp_v2.0_unigene80020	2/455

Source	Descriptions	Term	Type	Identity
AutoFact	Elongation factor 2 n=32 Tax=Magnoliophyta RepID=EF2_BETVU	-	-	89%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	elongation factor ef-2	-	-	96%

Source	GOs	Term	Type	Identity
Blast2go	response to cold	GO:0009409	Biological Process	96%
Blast2go	copper ion binding	GO:0005507	Molecular Function	96%
Blast2go	cytosol	GO:0005829	Cellular Component	96%
Blast2go	nucleolus	GO:0005730	Cellular Component	96%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	96%
Blast2go	chloroplast	GO:0009507	Cellular Component	96%
Blast2go	plasma membrane	GO:0005886	Cellular Component	96%

Source	InterPros	Term	Type	Identity
Sma3	Protein synthesis factor, GTP-binding	IPR000795	-	-
Sma3	Ribosomal protein S5 domain 2-type fold, subgroup	IPR014721	-	-
Sma3	Translation elongation factor EFG/EF2, C-terminal	IPR000640	-	-
Sma3	Translation elongation factor EFG/EF2, domain IV	IPR005517	-	-
Sma3	Translation elongation factor EFTu/EF1A, domain 2	IPR004161	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ACX5

Fln msg: your sequence is longer than subject: 844 - 267

Fln protein: MVKFTAEELRKIMDRKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYVMEDSAVKNFKGDREGHEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFSRVIENANVIMATYEDPLLGDCQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDEAKMMERLWGENFFDPATKKWTTKNTGSATCKRGFVQFIYEPIKQIINICMNDQKDKLWPMLQKLGVVMKSDEKELVAKALMKRVMQTWLPASSALLEMMIFHLPSPAKAQRYRVENLYEGPLDDVYATAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFAGRVATGMKVRIMGPNYVPGQKKDLYTKSVQRTVIWMGKRQESVEDVPCGNTVALVGLDQFITKNATLTNEKEADAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIEESGEHIIAGAGELHLEICLKDLQDDFMGGAEIVVSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYFEARPLEEGLAEAIDDGRIGPKDDPKARAKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAAFQWASKEGALAEENMRGICFEVCDVVLHTDAIHRGGGQVIPTARRVMYASQLTAKPRLLEPVYLVEIQAPENALGGIYGVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMGSDPLEPGSQAGQLVTDIRKRKGLKESMTPLSEFEDKL*

Protein Length: 845

Fln nts: TCTAGAGTACGCGGGAAGCTTTTCTATTTCTCATTATCGTTACGAAGAGCAACCAGCTGCAAAGAGTACAAACGAATTGCAGCTAGACACAGGTGCTCATTGGTATTCAAGAGTAAGGCAAA_-_ATGGTGAAGTTCACGGCTGAAGAGCTTCGTAAAATCATGGACAGGAAGCATAACATACGAAACATGTCTGTTATTGCCCATGTTGATCACGGAAAATCCACTCTCACTGATTCTTTGGTAGCAGCAGCTGGTATCATTGCTCAAGAAGTTGCTGGAGATGTCAGAATGACTGATACTCGGGCAGATGAAGCTGAACGTGGCATCACCATCAAGTCAACTGGAATTTCGTTGTACTATGTGATGGAGGATTCAGCGGTGAAAAATTTCAAGGGGGATAGAGAAGGACACGAATATTTGATAAATCTGATTGATTCTCCAGGGCATGTTGACTTTTCTTCAGAAGTTACAGCAGCCCTGCGAATCACAGATGGTGCACTGGTTGTGGTAGATTGTATTGAAGGGGTTTGTGTCCAGACTGAGACTGTTCTTCGTCAAGCTCTTGGAGAAAGGATTAGGCCTGTTCTCACTGTGAACAAGATGGACAGGTGCTTTCTTGAGTTGCAGGTTGATGGAGAGGAAGCTTACCAAACCTTCTCACGTGTCATTGAAAATGCAAATGTGATTATGGCTACTTATGAAGATCCTCTTCTTGGTGACTGCCAAGTTTATCCTGAAAAAGGTACAGTTGCATTCTCGGCAGGTCTGCACGGGTGGGCATTTACCCTCACAAATTTTGCAAAAATGTATGCTTCAAAGTTTGGAGTGGATGAAGCAAAGATGATGGAGAGGCTCTGGGGTGAGAACTTTTTTGATCCAGCTACAAAGAAATGGACAACCAAGAATACAGGTTCTGCAACTTGCAAAAGAGGATTTGTTCAATTCATATATGAACCTATTAAGCAAATTATCAATATTTGTATGAATGATCAAAAGGATAAGTTGTGGCCCATGTTGCAGAAATTGGGAGTTGTAATGAAAAGTGACGAGAAGGAGCTGGTTGCAAAAGCACTCATGAAGCGTGTCATGCAAACCTGGCTACCTGCAAGTAGTGCTTTACTTGAAATGATGATTTTCCATCTTCCTTCTCCAGCGAAGGCACAGAGATATCGTGTGGAAAACTTGTATGAAGGACCTCTTGATGATGTATATGCAACTGCAATAAGAAACTGTGACCCTGAGGGTCCACTGATGTTGTATGTTTCAAAAATGATTCCAGCTTCGGACAAAGGACGTTTCTTTGCCTTTGGTCGTGTTTTTGCTGGCAGAGTTGCAACAGGTATGAAGGTAAGGATCATGGGTCCCAACTATGTGCCAGGTCAGAAGAAAGATTTATATACAAAGAGTGTTCAAAGGACTGTGATATGGATGGGAAAGAGACAAGAATCTGTTGAGGATGTGCCTTGTGGAAATACAGTGGCTTTGGTTGGGTTAGACCAGTTCATAACCAAAAATGCTACACTGACAAACGAGAAGGAGGCTGATGCTCATCCGATCAGAGCAATGAAGTTCTCTGTGTCCCCTGTTGTACGTGTTGCTGTGCAGTGCAAGGTGGCATCTGACCTTCCAAAACTTGTTGAAGGGCTGAAGCGTCTTGCTAAGTCGGATCCTATGGTTGTTTGTACAATTGAGGAATCTGGAGAACATATTATTGCAGGTGCAGGAGAGCTTCATCTCGAGATTTGCTTAAAAGATCTCCAAGATGATTTTATGGGTGGAGCTGAGATTGTTGTTTCTGATCCTGTTGTCTCATTTAGAGAAACTGTTTTGGAGAAATCATGCCGTACTGTTATGAGCAAGTCTCCAAATAAACATAACAGGCTTTACTTTGAAGCAAGACCTTTAGAAGAAGGTCTTGCAGAAGCAATTGATGATGGTCGCATTGGCCCAAAGGATGATCCAAAGGCTCGCGCAAAAATCCTTTCTGAGGAATTTGGATGGGACAAAGATTTGGCTAAGAAGATCTGGTGTTTTGGACCTGAAACCACTGGTCCCAATATGGTGGTGGATATGTGTAAGGGAGTTCAATACTTGAATGAAATTAAAGATTCTGTGGTTGCTGCATTCCAATGGGCATCTAAGGAAGGTGCTCTTGCAGAAGAAAATATGCGTGGTATTTGCTTTGAGGTTTGTGACGTGGTTTTGCACACTGATGCTATCCATAGAGGAGGTGGCCAGGTTATCCCAACGGCCAGAAGGGTTATGTATGCATCTCAGCTTACTGCCAAACCACGGCTTCTTGAGCCAGTATATCTCGTTGAGATTCAGGCTCCTGAGAATGCCCTTGGTGGTATTTATGGTGTGCTGAACCAGAAGAGAGGTCATGTTTTTGAAGAAATGCAGAGGCCAGGTACTCCACTATACAACATCAAGGCATATCTGCCAGTTGTTGAATCATTCGGATTCTCAAGCACTCTCCGTGCTGCAACTTCTGGCCAGGCTTTCCCTCAATGTGTGTTTGACCACTGGGATATGATGGGCTCTGATCCATTGGAACCTGGTTCCCAAGCTGGGCAGCTTGTGACTGATATCCGTAAGAGGAAGGGTCTTAAGGAGAGTATGACTCCCTTGTCAGAGTTCGAAGACAAGCTGTAG___AGCTTTGCTATGTTTGCATGTCGGATGCTGTCAAGATTGAGGAACCTCCGAGTATTAAAACACAGTTTTGTGTGCTAGGACTAGTTGAATTTATGCTATTCAGGTATTTTTGTGATCTGTTATTTATGTTATTCAGGTATTTTTGTGATTTGAAAATACTTTTTACAAGGTACATCCATTAATACTTTTAAATGTTACACATTCTCCCTTGACATT

Fln Alignment:

biogeco3_mira_c15875___MSKSPNKHNRLYFEARPLEEGLAEAIDDGRIGPKDDPKARAKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAAFQWASKEGALAEENMRGICFEVCDVVLHTDAIHRGGGQVIPTARRVMYASQLTAKPRLLEPVYLVEIQAPENALGGIYGVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMGSDPLEPGSQAGQLVTDIRKRKGLKESMTPLSEFEDKL
D5ACX5__________________MSKSPNKHNRLYFEARPLEEGLAEAIDDGRIGPKDDPKARAKILSEEFGWDKDLAKKIWCFGPETTGPNLVVDMCKGVQYLNEIKDSVVAAFQWASKEGALAEENMRGICFEVCDVVLHTDAIHRGGGQIIPTARRVMYASQLTAKPRLLEPVYLVEIQAPENALGGIYGVLNQKRGHVFEEMQRQGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMGSDPLETGSQAGQLVTDIRKRKGLKESMTPLSDFEDKL

SNPs (tot: 53)

Position	A %	C %	G %	T %	Probability
140	33		66		0.997452
148	75		25		0.996473
157	75	25			0.996475
160	75		25		0.996476
172	25		75		0.996473
182	33	66			1.0
185	66		33		1.0
186		66		33	1.0
217		16		83	0.994512
271			12	87	0.992554
427	10			90	0.90298
428		10	90		0.90298
461	15	84			0.999986
562	18			81	0.999994
564	18		81		0.999994
566		81		18	0.999994
575	11		88		0.991528
576		11	88		0.991528
578			88	11	0.991528
579	88			11	0.991528
600	10	90			0.90298
862		10	90		0.90298
864			90	10	0.90298
865			90	10	0.90298
882	27			72	1.0
883	27			72	1.0
885			27	72	1.0
1472	5	17		5	1.0
1473			88	11	0.999952
1808		12	87		0.999964
1850	11			88	0.991528
2105			90	6	0.997952
2149	9		90		0.999872
2173		8	88	4	0.999262
2174	8		92		0.999718
2176			92	8	0.999718
2219	12			88	1.0
2220	12		88		1.0
2224	88			4	0.999262
2225		92		8	0.999718
2282	8	91			0.999807
2285			91	8	0.999807
2286	91			8	0.999807
2734	8	91			0.999807
2736	4	86		8	0.999539
2757	11			88	0.999937
2830		16		83	0.999991
2831	16			83	0.999991
2848	87			12	0.992555
2858	85	14			0.993535
2859	14		85		0.993535
2860			85	14	0.993535
2878	50			50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain