SustainPineDB

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Assembly info
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ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene18784

Length: 262 nt

UniGene Fasta

>biog3_v1.0_unigene18784
AATGTCTTCCCAGAAGGTGAAACCCATGTTTCTACCAGAGTTGGAGGAACAATGTAAGTTGTGCAATTCTTCTCAAAATCGATATTTTTTAGGCGTAGAATCCTGATATTAATTTACTTTTTGCACGAGTTTGTTATAAGGCAGAGGCTACACCGCACCAGAGTATGCCGTTCATGGGCAATTGACGGAAAAGGCAGACGTTTACAGTTATGGGATCGTGGTTCTCGAGATTGTGAGTGGGAGAAAGTGTGTAGATGTAACA

Ace file of the UniGene biog3_v1.0_unigene18784

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene36174	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	putative receptor ser/thr protein [Oryza sativa Japonica Group] gb\|ABF95119.1\| Protein kinase domain containing protein, expressed [Oryza sativa Japonica Group]	-	-	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	87%
Blast2go	leucine-rich repeat family protein protein kinase family protein	-	-	70%

Source	InterPros	Term	Type	Identity
Sma3	IQ motif, EF-hand binding site	IPR000048	-	-
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Myosin head, motor domain	IPR001609	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	Transcription factor, MADS-box	IPR002100	-	-
Sma3	Chaperonin TCP-1, conserved site	IPR002194	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Lipocalin	IPR002345	-	-
Sma3	Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB	IPR002523	-	-
Sma3	Dilute	IPR002710	-	-
Sma3	Glycoprotein D/GG/GX, Herpesvirus	IPR002896	-	-
Sma3	Gnk2-homologous domain	IPR002902	-	-
Sma3	Myosin, N-terminal, SH3-like	IPR004009	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	SKG6/AXL2 alpha-helix transmembrane domain	IPR014805	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	HTH domain AraC-type, conserved site	IPR018062	-	-
Sma3	Dil domain	IPR018444	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLL8

Fln msg: Separated hits, possible frame ERROR between 54 and 146, Distance to subject end: 117 aas, your sequence is shorter than subject: 88 - 245

Fln protein: NVFPEGETHVSTRVGGTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGYTAPEYAVHGQLTEKADVYSYGIVVLEIVSGRKCVDVT

Protein Length: 89

Fln nts: AATGTCTTCCCAGAAGGTGAAACCCATGTTTCTACCAGAGTTGGAGGAACAATxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAGGCTACACCGCACCAGAGTATGCCGTTCATGGGCAATTGACGGAAAAGGCAGACGTTTACAGTTATGGGATCGTGGTTCTCGAGATTGTGAGTGGGAGAAAGTGTGTAGATGTAACA

Fln Alignment:

biogeco3_mira_c15872___FPEGETHVSTRVGGTMxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGYTAPEYAVHGQLTEKADVYSYGIVVLEIVSGRKCVD
B8LLL8__________________FPDGETHVSTRVGGTIxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGYTAPEYAVHGQLTEKADVYSYGIVVLEIVSGRKSVN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain