SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene18751

Length: 229 nt

UniGene Fasta

>biog3_v1.0_unigene18751
AATGTAGGTGATCTGATCAGCTATGTCCCTTACTCAATGGGAAGAATGACATACATCTGGGGCAGTGATGCAGAGGAGTTTAGGCCTGAGAGATGGCTTGAGAGTGGAGTTTTTAAGTCTGTCACCATTCAAATTCACTGCATTTCAGGCTGGGCCTCGCATTTGTCTTGGGAAGGACTTTGCATACATGCAAATGAAGATTTTGCTGCTGTGCTTGTGCGTTTCTTCA

Ace file of the UniGene biog3_v1.0_unigene18751

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene12455	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Cytochrome P450 704C1 n=1 Tax=Pinus taeda RepID=C04C1_PINTA	-	-	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	54%
Blast2go	cytochrome p450	-	-	76%

Source	GOs	Term	Type	Identity
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	76%
Blast2go	heme binding	GO:0020037	Molecular Function	76%
Blast2go	monooxygenase activity	GO:0004497	Molecular Function	76%
Blast2go	electron carrier activity	GO:0009055	Molecular Function	76%
Blast2go	integral to membrane	GO:0016021	Cellular Component	76%

Source	InterPros	Term	Type	Identity
Sma3	RNA helicase, ATP-dependent, DEAD-box, conserved site	IPR000629	-	-
Sma3	ATPase, F1 complex, OSCP/delta subunit	IPR000711	-	-
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Lipocalin	IPR002345	-	-
Sma3	Cytochrome P450, E-class, group I	IPR002401	-	-
Sma3	Cytochrome P450, E-class, group IV	IPR002403	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3		IPR017973	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5A7Y6

Fln msg: Separated hits, possible frame ERROR between 99 and 110, Distance to subject end: 41 aas, your sequence is shorter than subject: 77 - 559

Fln protein: NVGDLISYVPYSMGRMTYIWGSDAEEFRPERWxxxxxFLSLSPFKFTAFQAGPRICLGKDFAYMQMKILLLCLCVSS

Protein Length: 78

Fln nts: AATGTAGGTGATCTGATCAGCTATGTCCCTTACTCAATGGGAAGAATGACATACATCTGGGGCAGTGATGCAGAGGAGTTTAGGCCTGAGAGATGGCTxxxxxxxxxxxxGTTTTTAAGTCTGTCACCATTCAAATTCACTGCATTTCAGGCTGGGCCTCGCATTTGTCTTGGGAAGGACTTTGCATACATGCAAATGAAGATTTTGCTGCTGTGCTTGTGCGTTTCTTCA

Fln Alignment:

biogeco3_mira_c15830___GDLISYVPYSMGRMTYIWGSDAEEFRPERWLxxxxFLSLSPFKFTAFQAGPRICLGKDFAYMQMKIL
D5A7Y6__________________GTRVTYHPYAMGRMNAIWGADCLQFKPERWVxxxxFVPQSPFKFAVFQGGVRVCLGKEMAFIEMKFV

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
119		66	33		0.997452
120	33	33		33	0.997749
123	33		66		0.997453
156	33		66		0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain