SustainPineDB

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Assembly info
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene18747

Length: 404 nt

UniGene Fasta

>biog3_v1.0_unigene18747
AATGTAGTTGGATGAATTGACCTGCCAGATAAAGGAAGCTGGTTATGTACCTCACGCAAATTTTGTATTGCCTGATGTGATGGAGGAGGAAGGACGGCTTGTTTCTTATCACAGTGAGAAGCTGGCTATAGCATTTGGGCTTATTAGCACGCTTTGTACAACAAGTTTCCAAGTTGTTCAGAACCATCGCATCTGTGCTGACTGCCATACTGCAGCCAAGCTCATCTCCAAGCTGTTGGTCGAGAAATTCTTGTAAGAGATGCTAGCCGCTTTCATCATTTTAATGGTGGCATGTGTTCTTGTGGCGATTACTGGTGATCTCTTCAAAATTTCTTTCATTGATTCGGCAGTGGGTGATGGCTACTGATGATTTGCTCTCAACTTTACTTACACCTTGTAGACAG

Ace file of the UniGene biog3_v1.0_unigene18747

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene34046	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	53%
Blast2go	pentatricopeptide repeat-containing protein chloroplastic-like	-	-	74%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Beta-lactamase, class-A/D	IPR000871	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Mannose-binding lectin	IPR001229	-	-
Sma3	C-5 cytosine methyltransferase	IPR001525	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	Domain of unknown function DUF221	IPR003864	-	-
Sma3	Uncharacterised protein family Cys-rich	IPR006461	-	-
Sma3	Domain of unknown function DUF659	IPR007021	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3		IPR011523	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Methyltransferase type 11	IPR013216	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Thioredoxin, conserved site	IPR017937	-	-
Sma3		IPR018115	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AAE0

Fln msg: Overlapping hits, possible frame ERROR between 253 and 235, Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 106 - 246

Fln protein: M*LDELTCQIKEAGYVPHANFVLPDVMEEEGRLVSYHSEKLAIAFGLISTLCTTSFQVVQNHRICADCHTAAKLISKxxxxxxxxRDASRFHHFNGGMCSCGDYW*

Protein Length: 107

Fln nts: AATGTAGTTGGATGAATTGACCTGCCAGATAAAGGAAGCTGGTTATGTACCTCACGCAAATTTTGTATTGCCTGATGTGATGGAGGAGGAAGGACGGCTTGTTTCTTATCACAGTGAGAAGCTGGCTATAGCATTTGGGCTTATTAGCACGCTTTGTACAACAAGTTTCCAAGTTGTTCAGAACCATCGCATCTGTGCTGACTGCCATACTGCAGCCAAGCTCATCTCCAAGxxxxxxxxxxxxxxxxxxxxxxxxAGAGATGCTAGCCGCTTTCATCATTTTAATGGTGGCATGTGTTCTTGTGGCGATTACTGGTGATCTCTTCAAAATTTCTTTCATTGATTCGGCAGTGGGTGATGGCTACTGATGATTTGCTCTCAACTTTACTTACACCTTGTAGACAG

Fln Alignment:

biogeco3_mira_c15822___LDELTCQIKEAGYVPHANFVLPDV-MEEEGRLVSYHSEKLAIAFGLISTLCTTSFQVVQNHRICADCHTAAKLISKLxxxxxxVRDASRFHHFNGGMCSCGDYW
D5AAE0__________________LEELARQMEAAGYVPDTNFVLHDVEMEQKEHSLYHHSEKLAIAFGLISTLPGLPVRIIKNLRVCGDCHTATKFISKIxxxxxxIRDANRFHHFKDGLCSCGDYW

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain